Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d22f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   4.3  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    28   5.7  
At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase (M...    27   10.0 

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 213 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 356
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 398 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 282
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 75  STVPEFKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASKDC--YTNMK 248
           STVP F ++  DA     +   +SL     +  ++   Y   QD   E         +  
Sbjct: 652 STVPRFASSSGDA-----EASPMSL----TDSGFQNSLYSCMQDTTHELLHGAGQINSSN 702

Query: 249 AYENFMMMYKVGFLPKNLEFSIF--YEKMREEAIALFKL 359
             +NF+ +YK G + ++L+ S F  Y ++REE   +F +
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAI 741


>At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase
           (MVD1) identical to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 412

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = -2

Query: 317 KDREFQILGKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEKRQN 138
           K++  +I  K+ + +H H   +  H      AGL     G   ++  +A L+NV E    
Sbjct: 96  KEKGIKIAKKDWEKLHLH---IASHNNFPTAAGLASSAAGFACLVFALAKLMNVNEDPSQ 152

Query: 137 LLLLFDERSVNRCRFEFRYGATESEGNK 54
           L  +  + S + CR  F      + GNK
Sbjct: 153 LSAIARQGSGSACRSLFGGFVKWNMGNK 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,656
Number of Sequences: 28952
Number of extensions: 244799
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)