Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d21r
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   3.9  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   3.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 397 LTPVAPKPVHPTLPPNQIKPVPVYPTPA 314
           L  V P P+ P  PP  I P  +  + A
Sbjct: 177 LPQVPPLPLPPIFPPTMINPSAICESAA 204


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 559 CKSCDIHCRKRLITEQ 606
           CKSCD+H R   + +Q
Sbjct: 213 CKSCDLHHRLSKLIKQ 228


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -3

Query: 388 VAPKPVHPTLPPNQIKPVPVYPTP---ATRLITTPG 290
           V P P   T  P     +PV P P   A+ L+  PG
Sbjct: 69  VTPLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPG 104


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 403 TALTPVAPKPVHPTLP 356
           +A T + P+P+HP++P
Sbjct: 59  SAHTVLIPQPLHPSVP 74


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 349 QIKPVPVYPTP-ATRLI-TTPG 290
           +++P  VYPTP   RL+ T PG
Sbjct: 82  RVRPPKVYPTPYGGRLVWTLPG 103


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 349 QIKPVPVYPTP-ATRLI-TTPG 290
           +++P  VYPTP   RL+ T PG
Sbjct: 396 RVRPPKVYPTPYGGRLVWTLPG 417


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 349 QIKPVPVYPTP-ATRLI-TTPG 290
           +++P  VYPTP   RL+ T PG
Sbjct: 629 RVRPPKVYPTPYGGRLVWTLPG 650


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 349 QIKPVPVYPTP-ATRLI-TTPG 290
           +++P  VYPTP   RL+ T PG
Sbjct: 629 RVRPPKVYPTPYGGRLVWTLPG 650


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 256 NSQGKGSVIKPYSYSDAVKQG*TFNENIKDLICL 155
           NS  + S +   SY+  +K    F   IKD + L
Sbjct: 48  NSDSENSEVSSNSYTPKIKSCRPFKAYIKDPLTL 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,898
Number of Sequences: 336
Number of extensions: 3164
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)