Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d21r
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_35562| Best HMM Match : MAM (HMM E-Value=6.4e-20) 31 1.1
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 1.1
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 30 1.5
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 2.5
SB_22155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_21642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 3.4
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 29 4.4
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 29 4.4
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 29 4.4
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 29 4.4
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 5.9
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 28 5.9
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 28 5.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 5.9
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 28 7.7
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 28 7.7
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 28 7.7
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 403 TALTPVAPKPVHPT-LPPNQIKPVPVYPTPATRLITTPGPGS 281
T TP P P PT P Q P P P+P TTP P +
Sbjct: 32 TTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPAT 73
Score = 34.3 bits (75), Expect = 0.089
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 403 TALTPVAPKPV-HPTLPPNQIKPVPVYPTPATRLITTPGP 287
TA TP P P H P P P PTP TTP P
Sbjct: 108 TAHTPTTPTPTAHTPTKPTPKTPTPTTPTPTAHTPTTPTP 147
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 403 TALTPVAPKPVHPT-LPPNQIKPVPVYPTPATRLITTPGP 287
TA T P P P+ P Q P P PTP T TP P
Sbjct: 47 TAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTP 86
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 403 TALTPVAPKPVHPT-LPPNQIKPVPVYPTPATRLITTPGPGS 281
T +P AP PT P P P PTP T +T P P +
Sbjct: 57 TTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPAT 98
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 394 TPVAPKPVHPTLPPN--QIKPVPVYPTPATRLITTPGP 287
TP AP PTL Q P P PTP T T P P
Sbjct: 4 TPTAPTLTTPTLTKATPQTTPTPTKPTPTTHTPTKPSP 41
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -3
Query: 403 TALTPVAPKPVHPTL--PPNQIKPVPVYPTPATRLITTPGP 287
T TP P P TL P P P PTP TTP P
Sbjct: 77 TTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTPTP 117
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = -3
Query: 400 ALTPVAPKP---VHPTLPPNQIKPVPVYPTPATRLITTPGP 287
A TP KP H P P PTP T TTP P
Sbjct: 97 ATTPTPTKPTPTAHTPTTPTPTAHTPTKPTPKTPTPTTPTP 137
>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPG 290
P P P +P PP +P P P P ++ + PG
Sbjct: 781 PTTPPPEYPPPPPGLARPNPPPPNPPLQVTSIPG 814
>SB_35562| Best HMM Match : MAM (HMM E-Value=6.4e-20)
Length = 256
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGP 287
P +PKP PT PPN P PV P P TPGP
Sbjct: 227 PASPKP--PTAPPN-TPPPPVTPPPP----NTPGP 254
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGP 287
P P+ PT PP Q P P+ P L+T P P
Sbjct: 630 PTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLP 664
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATR 308
P P+PV +PP Q P PVY TR
Sbjct: 471 PAEPQPVQTYVPPQQGLPQPVYQIDQTR 498
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 403 TALTPVAPKPVHPTLPPNQIKPVPV-YPTPATRL--ITTPGPGSVQQLVTFYNS 251
T TPVAP P PT + +P+P P P L + PGP Q + +S
Sbjct: 418 TTSTPVAPPPTPPTRGGSTKRPLPTPRPKPPVTLRNKSVPGPNQKQPAQPYRHS 471
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 394 TPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGP 287
TP PKP P PP P+P+ P P L P P
Sbjct: 897 TPTTPKPTTPAPPP----PLPLAPEPPPPLPPPPPP 928
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 394 TPVAP--KPVHPTLPPNQIKPVPVYP 323
TP P +P PT PP KP PV P
Sbjct: 1427 TPTKPTKRPTRPTRPPKPTKPAPVPP 1452
>SB_22155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 304 ITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG*TFNEN 176
I +P PG +L+T + + +I P S++ KQG T N
Sbjct: 17 ILSPRPGDSMELITLQSYHPQQDMITPSSHTHPTKQGDTMELN 59
>SB_21642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 304 ITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG*TFNEN 176
I +P PG +L+T + + +I P S++ KQG T N
Sbjct: 17 ILSPRPGDSMELITLQSYHPQQDMITPSSHTHPTKQGDTMELN 59
>SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Frame = -3
Query: 403 TALTPVAPKPVHPTLPPNQIKPVPVYPT---------------PATRLITTPGPGSVQQL 269
T TP+ PK +PT P + VP+ PT P R P S++
Sbjct: 137 TTQTPLPPK-TNPTTEPTESNEVPLLPTENSHTKSSLQSDDPKPTLRPSMAPAVTSIRPQ 195
Query: 268 VTFYNSQGKGSVI---KPYSYSDAVK 200
VT Y+SQ + I +P S+ D ++
Sbjct: 196 VTKYSSQTEKEAIVREEPCSHDDGIR 221
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -3
Query: 400 ALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYN 254
+LTP+ K + N +KP + + T PG + + L+T N
Sbjct: 391 SLTPILSKVAKDFVVENHVKPAVLAKVDPRQFGTVPGSSTTEALITMIN 439
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -3
Query: 391 PVAPKPV--HPTLPPNQIKPVP---VYPTPATRLITTPGP 287
P P P HP+ P I P P + PTP T + TP P
Sbjct: 163 PPTPHPTYKHPSYPTYNIPPTPHTSIPPTPHTSIPPTPRP 202
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 403 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTP 293
T TP P P P PP Q P P +P A + P
Sbjct: 450 TTATPPPPPPSQP--PPQQFIPSPQFPEQALQFTNQP 484
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 388 VAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGP 287
+ P P+HP +PP P TP + TP P
Sbjct: 220 IPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLP 253
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 394 TPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGS 281
TP+ P P+ P ++ P P A R+ GPGS
Sbjct: 336 TPIHLPPTSPSFTPGRVHSDPETPRRAERVRARRGPGS 373
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 397 LTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGS 281
LTP A PV P P+ TP +TPG S
Sbjct: 961 LTPAATSPVSPAAAPSTTPGAAPSTTPGAESSSTPGAAS 999
>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPG 284
P P+P P P P TPA + TTP PG
Sbjct: 209 PQQPQPTQPVQPGQTQAPTAAQTTPAP-VQTTPAPG 243
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -3
Query: 406 VTALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQGKGSVIK 227
V + V P P P + + P P PTPA T P P F +S G + +K
Sbjct: 324 VAPSSTVTPPVTEPAPPSSVVAPPPAVPTPA----TAPPPVVAPPPSVFASSSGVPTPVK 379
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 382 PKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVT 263
P P+ P PP + +P P++P P TTP P Q + T
Sbjct: 207 PPPIPPIDPP-RTQPPPIFPQP-----TTPAPTKCQVINT 240
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 403 TALTPVAPKPVHPTL-PPNQIKPV---PVYPTPATRLITTP 293
T LT +P PT PP + P+ PVY TP +TTP
Sbjct: 208 TTLTASSPVETTPTASPPVKTTPLAATPVYATPTAPELTTP 248
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 391 PVAPKPVHPT-LPPNQIKPVPVYPTPATRLITTP 293
P+ P HPT PP Q KP P P P + + + P
Sbjct: 1093 PIPTNPAHPTEPPPRQPKPTPA-PRPRSWVESQP 1125
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 370 HPTLPPNQIKPVPVYPTPATRLITTPGPGSVQ 275
HP LP +++ P+ P+P L TP P Q
Sbjct: 474 HPPLPRLRLRLTPLQPSPPQPLRITPPPSDQQ 505
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 397 LTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSV 278
L +P P PP P P P P L P PGSV
Sbjct: 183 LAAASPPPPSGGPPPPPPPPPPPPPPPILELAAPPPPGSV 222
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 391 PVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQGKG 239
P P P P PP TP + + GP + Q+++ F ++G+G
Sbjct: 869 PPPPPPPPPPPPPPPPPASSTGSTPGGDKVPSVGPKTEQEMIHFLVARGEG 919
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 400 ALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNS 251
+LTPV K + +KP + R T PG + L++ ++S
Sbjct: 371 SLTPVLSKLAEDYVVEQHLKPAVLKKVDVNRFRTVPGSNTTHTLISMHHS 420
>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 704
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 382 PKPVHPTLPPNQIKPVPVYPTPATRLIT 299
PKPV P +P KP P P P ++ IT
Sbjct: 365 PKPVMPDIPDTGSKPKPARP-PVSKKIT 391
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 406 VTALTPVAPKPVHPT-LPPNQIKPVPVYPTP 317
++ L P P++P + P I P P+ PTP
Sbjct: 188 LSTLIPSTTAPINPAAINPTPINPTPINPTP 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,468,717
Number of Sequences: 59808
Number of extensions: 401066
Number of successful extensions: 1546
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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