Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d21r
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 326 PY-SSDAAHHHPRTWKRAAARHF 261
           PY S+ AAHHH +  +  AA  F
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAF 112


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 4   IFKHLPLSTLLTVS*IFN*KTNYN 75
           IFK+LP  TL+ +S +   +T YN
Sbjct: 220 IFKNLPEETLIKISDVLE-ETFYN 242


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 652 RQHLRECLVNMKII 611
           R HLR CL  +K++
Sbjct: 61  RAHLRNCLEKLKVL 74


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 583 GSECRKIYKPIDKNANIDFINMEAGGARPV 494
           G  C++++     + + DFI +  G AR V
Sbjct: 53  GEPCQRVHSSRIPDLSYDFIVVGGGAARAV 82


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = -3

Query: 406 VTALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTP---GPGSVQQLVTFYNSQG 245
           ++AL      P    LPP+   P+P  P  +      P    PGS+  + T  +  G
Sbjct: 394 MSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAG 450



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 431 HGCRSRLDNRRLCEWLISWLPYWPRSP 511
           H C  R++N +   W +  + ++ R P
Sbjct: 559 HKCFMRVENVKGAVWTVDEVEFYKRRP 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,954
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)