Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d21f
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 335 PY-SSDAAHHHPRTWKRAAARHF 400
           PY S+ AAHHH +  +  AA  F
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAF 112


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 9   RQHLRECLVNMKII 50
           R HLR CL  +K++
Sbjct: 61  RAHLRNCLEKLKVL 74


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 78  GSECRKIYKPIDKNANIDFINMEAGGARPV 167
           G  C++++     + + DFI +  G AR V
Sbjct: 53  GEPCQRVHSSRIPDLSYDFIVVGGGAARAV 82


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 255 VTALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTP---GPGSVQQLVTFYNSQG 416
           ++AL      P    LPP+   P+P  P  +      P    PGS+  + T  +  G
Sbjct: 394 MSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAG 450



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -1

Query: 230 HGCRSRLDNRRLCEWLISWLPYWPRSP 150
           H C  R++N +   W +  + ++ R P
Sbjct: 559 HKCFMRVENVKGAVWTVDEVEFYKRRP 585


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 135 INMEAGGARPVGKPTDK 185
           +N  AGG +  GKP ++
Sbjct: 68  VNFVAGGIQQAGKPKEE 84


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 372  PGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQ 464
            PG ++ L+T +  QG+   IK    S+  +Q
Sbjct: 1030 PGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQ 1060


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,058
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)