Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d20r
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 8e-18
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.7
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.7
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 3.0
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 29 3.0
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 9.0
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 9.0
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 87.8 bits (208), Expect = 8e-18
Identities = 48/81 (59%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -3
Query: 712 MVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYA 536
+VPA P + A R FQT+S +D+DSAAKF VFGSLIIGYA
Sbjct: 75 VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGAGIGTVFGSLIIGYA 134
Query: 535 RNPSLKQQLFSYAILGFALSE 473
RNPSLKQQLFSYAILGFALSE
Sbjct: 135 RNPSLKQQLFSYAILGFALSE 155
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 491 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 652
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787
Query: 653 DRCGLEGPHCRELCRDS 703
C + +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 491 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 652
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 52 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111
Query: 653 DRCGLEGPHCRELCRDS 703
C + +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 623 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 727
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 392 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 499
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 407 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 583
K++ L+ E Q H + + +L +N V + +G +EGAE SS
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258
Query: 584 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 691
GT+ + +++ + N LS++C + HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = -2
Query: 599 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 519
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 605 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 709
R T T +FG +VN+ S LEG R+ D+ +
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 422 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 562
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 404 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 496
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,158,274
Number of Sequences: 59808
Number of extensions: 489591
Number of successful extensions: 1452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -