Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d20r
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    29   2.4  
At5g61580.1 68418.m07727 phosphofructokinase family protein simi...    29   4.2  
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    28   7.4  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    27   9.8  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -3

Query: 562 FGSLIIGYARNPSLKQQLFSYAILGFALSE 473
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 281 CNTHQSLHHYEG-EVSKHSIPWLSTP-DSIH*NLICRMAVVVFLKVNSLESE-EQQERHH 451
           C  H+   +YE  E+ + +I +  T  +      +   A    LKV    S+ EQQ R  
Sbjct: 167 CMDHEIAEYYESDEMFEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFM 226

Query: 452 KTEQTHSLRQGETQNGV*EQLLLEG 526
           KT+  HSL     + GV   LL  G
Sbjct: 227 KTQARHSLNNKLLKYGVKGHLLTAG 251


>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 530

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 79  WLHFYIVIEFCNVRALMLNMILIITVYKVRN-RNNCSINIMFT 204
           WL   I   F NVR +M+NM  I   Y +R   +N S N+  T
Sbjct: 401 WLTQQIKDHFTNVRKMMINMKYIDPTYMIRAIPSNASDNVYCT 443


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 669 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 538
           SRPH  ++ +TLLP+ +    R+WE    ++ ++ S   + SA+
Sbjct: 37  SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 536 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 631
           GI DD+G ++  +  S   +   R   T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 284 NTHQSLHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEE 433
           N   + H++E    KH++ W S   +   N   + AV +F+++N +E E+
Sbjct: 358 NVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN-IEGEK 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,535
Number of Sequences: 28952
Number of extensions: 311445
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)