Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d20f
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    27   0.13 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    24   0.93 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.6  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 487 YYCHPTYEVSVYTIWSGQPWNRMFGNLTLI 576
           Y+    Y++  Y  W  + W+    NL L+
Sbjct: 61  YFISNVYQILAYNFWKKKYWSEFLANLKLL 90


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 490 YCHPTYEVSVYTIWSGQPWNRMFGNL 567
           YC   Y + V T +  + W R+  NL
Sbjct: 76  YCFNYYVIVVTTFYKRRTWTRLLKNL 101


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 318 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 208
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 318 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 208
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 409 QTRRNPEWRMRTT 371
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 378 EQLLLEGGVPGIAD 337
           EQ+L EGG P + D
Sbjct: 837 EQILAEGGCPNLYD 850


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 158 PPIHRWYLLSLHSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVP 301
           P + R  L  L S L  G   P   +    + PN+++L       LVP
Sbjct: 129 PVVKRRLLQHLASCLNQGQKEPQVQVIVPEVAPNNIILGNGTGVQLVP 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,865
Number of Sequences: 336
Number of extensions: 3480
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)