Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d20f
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 4e-18
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.4
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.4
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 1.8
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.4
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 2.4
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.4
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 29 2.4
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 4.2
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 4.2
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 4.2
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 5.6
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 7.4
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 7.4
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) 27 9.8
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 88.6 bits (210), Expect = 4e-18
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 127 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 303
+A +RP + +VPA P + A R FQT+S +D+DSAAKF
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119
Query: 304 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 411
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -1
Query: 393 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 232
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787
Query: 231 DRCGLEGPHCRELCRDS 181
C + +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -1
Query: 393 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 232
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 52 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111
Query: 231 DRCGLEGPHCRELCRDS 181
C + +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 261 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 157
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Frame = -1
Query: 288 SHCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSRYHLCMGGYCCKWS 139
++C+C S+ E G ++V+ +D C + C C Y C+ G C KW
Sbjct: 1151 ANCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWP 1209
Query: 138 HQC---RVAEDG--RPGCRGDQSG 82
C + EDG PG G Q G
Sbjct: 1210 LTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.9 bits (64), Expect = 1.8
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Frame = -1
Query: 351 PGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRC----------GLEGPH 205
PG ++ C + G + +H C CT+ G+R N ++ +C G GP
Sbjct: 346 PGWTGPFCSKPCPPSLWGHNCAHPCNCTN----GARCNAVTGQCACTDGCSCNAGWTGPE 401
Query: 204 CRELC-RDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGR 76
CR+ C DS C C + +C A GR C +G R
Sbjct: 402 CRDPCGLDSWGPGCTNTCQCSRNGECDAA-SGRCACAPGFTGDR 444
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = -1
Query: 330 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYC 151
G D + G+ CR ++ + + C C +LCRD+ GGY
Sbjct: 278 GCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD-----GGYY 332
Query: 150 CKWSHQCRVAEDGRPGCRGD 91
C+ +V DG C G+
Sbjct: 333 CECHKGYQVGPDGM-SCIGN 351
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -1
Query: 462 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 292
ES Q H H + H Q + NG V ++L +G + D +C+ S+
Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQELRCDGDYACV-DHSDERNCACRSAEFK 80
Query: 291 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 112
+C ++F + + +D G + C C S H C G C WS C D
Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136
Query: 111 RPG 103
+ G
Sbjct: 137 QDG 139
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 144 TCSSTHPYTDGTCCPYTALCSAV 212
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 492 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 385
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 477 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 301
K++ L+ E Q H + + +L +N V + +G +EGAE SS
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258
Query: 300 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 193
GT+ + +++ + N LS++C + HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 222 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 130
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 222 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 73
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 131 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 244
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 63 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 221
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 144 TCSSTHPYTDGTCCPYTALCSAV 212
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
Score = 28.3 bits (60), Expect = 5.6
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -1
Query: 462 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 292
ES Q H H + H Q + NG V +++ +G + D +C+ S+
Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQEVRCDGDYACV-DHSDERNCACRSAEFK 80
Query: 291 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 112
+C ++F + + +D G + C C S H C G C WS C D
Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136
Query: 111 RPG 103
+ G
Sbjct: 137 QDG 139
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 270 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 94
ST E +R+ ++S D+C + CR+ C+ S + MG C + + + ++A P C G
Sbjct: 8 STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 201 RELCRDSRYHLCMGGYCCKWSHQCR 127
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +3
Query: 285 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 365
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 279 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 175
R T T +FG +VN+ S LEG R+ D+ +
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 462 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 322
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 480 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 388
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
Length = 479
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 118 FCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 216
+CN+ L R +VP T +VP T L V S+
Sbjct: 441 YCNNGLKRDGVSVPAFTTLVPEPRTSLYLVASW 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,076,978
Number of Sequences: 59808
Number of extensions: 479251
Number of successful extensions: 1742
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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