Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d20f
(642 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 27 0.20
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 0.47
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.8
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 7.7
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 21 7.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.7
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 26.6 bits (56), Expect = 0.20
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 462 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 292
+ ++QQ+R + ++ LR E + V E GG G+ D S ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 25.4 bits (53), Expect = 0.47
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 85 WRQTAFCFYKVRRATTKNTEKEETGL 8
W Q FC+++ AT KN + L
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSL 558
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 483 FLKVNSLESEEQQERHHK-TEQTHSLRQ 403
F++ +SL ++QQ++HH+ + H+ Q
Sbjct: 91 FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 32 VLCCRAPHLI 61
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 179 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 262
+L ++ L C + +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 21.4 bits (43), Expect = 7.7
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTS-SGTS 292
++S E++ER H + R+ EQL + G+ G+ G S+++ +G+S
Sbjct: 97 IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSS 155
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 7.7
Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
Frame = +2
Query: 149 QQYP-PIHRWY 178
Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,656
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -