Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d19r
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 312 5e-86
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 154 1e-38
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 141 1e-34
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 118 7e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 83 4e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 78 2e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.8
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 3.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 6.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 312 bits (765), Expect = 5e-86
Identities = 145/163 (88%), Positives = 152/163 (93%)
Frame = -1
Query: 751 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 572
KEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 571 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 392
GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+AP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAP 332
Query: 391 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 263
PERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 154 bits (373), Expect = 1e-38
Identities = 71/163 (43%), Positives = 105/163 (64%)
Frame = -1
Query: 751 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 572
KEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 571 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 392
G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYAS 337
Query: 391 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 263
PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 338 PERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 141 bits (341), Expect = 1e-34
Identities = 72/166 (43%), Positives = 107/166 (64%), Gaps = 12/166 (7%)
Frame = -1
Query: 751 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 572
KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 571 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APST 416
G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L P+
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPAR 332
Query: 415 M---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 290
+ K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 333 LPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 118 bits (285), Expect = 7e-28
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Frame = -1
Query: 700 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 548
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 547 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYS 374
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 373 VWIGGSILASLSTFQQMWISKQEYDESG 290
VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 571 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 392
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 391 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 266
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 83.0 bits (196), Expect = 4e-17
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Frame = -1
Query: 751 KEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITIGN 632
KE +CYV+ +F+++M S LE Y LPD QV+ + N
Sbjct: 219 KESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSN 278
Query: 631 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 452
ERF PE LF PS + + GI E S+ +I+ L N V GG +PG R
Sbjct: 279 ERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKR 338
Query: 451 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 272
+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+ R
Sbjct: 339 LSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTR 397
Query: 271 K 269
K
Sbjct: 398 K 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 77.8 bits (183), Expect = 2e-15
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Frame = -1
Query: 751 KEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLG 584
KE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 583 ME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--- 416
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 415 -----------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 272
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 631 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 452
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 451 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 278
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 517 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 347
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 346 SLSTFQQMWISKQEYDESGPSIVHRK 269
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 370 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 269
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 723 TSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 589
TS R PP + + SL N P RSS E D V + P++
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 750 RRSCATSLLTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 595
R S A SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 340 RFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 705 PPLHPAA-PSRSLTNFPTVRSSPSET 631
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 714 RRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 583
+ WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 112 KHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 445 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 335
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 696 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 592
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 8.9
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -1
Query: 724 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEACGIHET 557
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 556 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 377
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 376 S 374
S
Sbjct: 225 S 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,460
Number of Sequences: 5004
Number of extensions: 62791
Number of successful extensions: 228
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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