Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d18r
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 31 0.17
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.22
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.22
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.68
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.89
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 28 1.2
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.6
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 2.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 4.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.3
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 6.3
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 8.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.3
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 31.1 bits (67), Expect = 0.17
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Frame = -2
Query: 439 KLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV--YFKIMSTEDKQYLKLDNTKGS 266
K ID+ I +G K S+ F P E +R+ K++ ED LD K
Sbjct: 219 KDIDENEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSND-SLDLAKRR 277
Query: 265 SDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNRE--YNSVMTLDEDMAANEDREAL 92
S + +D+ W+ P ++ F V N E N M DE A D E
Sbjct: 278 SCKTPPMIEFVSDSSGELWWHAPFLF-----FSVLNVEDFTNFKMVCDESKAQTVDWEFE 332
Query: 91 GHSGEVSGYPQL 56
G V P+L
Sbjct: 333 GQKCSVEDLPKL 344
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.22
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 290 QVLFVFGGHDLEVYSVVFQHGGK 358
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 399 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 223
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 222 SNTTGT 205
+T +
Sbjct: 361 PTSTSS 366
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 399 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 223
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 222 SNTTGT 205
++ T
Sbjct: 415 PTSSST 420
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 399 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 223
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 222 SNTTGT 205
+T +
Sbjct: 307 PTSTSS 312
Score = 29.9 bits (64), Expect = 0.39
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 393 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSN 217
P T + S P P T+ TS S PP NST + +T V + SST P P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321
Query: 216 TTGT 205
T+ T
Sbjct: 322 TSST 325
Score = 29.5 bits (63), Expect = 0.51
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 399 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 223
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 222 S 220
+
Sbjct: 250 T 250
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 408 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 232
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 231 LTPSNTTGT 205
T S++T T
Sbjct: 658 STSSSSTAT 666
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 673 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 530
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 185 FVHGGLKVPVVFEGVSGAITVDDTVIT 265
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 79 LRCAPRLHGLRWRPYLHQVS 138
L A +LHG+RW Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 706 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 590
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 270 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 419
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.8
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +2
Query: 248 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 427
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 428 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 535
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 317 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 418
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = -2
Query: 265 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 131
SDDR+ GD+ + +Y++ +MYE ++ Y YN V+ L
Sbjct: 84 SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 469 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 377
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 236 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 358
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 8.3
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = -2
Query: 526 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 362
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 361 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIYGDSTADTFKH 215
P+L + + F + Y K +N SS D + DS A+ KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -2
Query: 487 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 308
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 307 EDKQYLK 287
+ ++K
Sbjct: 202 DGFDFIK 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,720
Number of Sequences: 5004
Number of extensions: 66421
Number of successful extensions: 282
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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