Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d18r
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    31   0.78 
At1g64150.1 68414.m07267 expressed protein contains Pfam profile...    29   2.4  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.1  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   4.1  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   4.1  
At1g47310.1 68414.m05238 expressed protein                             28   5.5  
At3g62000.1 68416.m06963 O-methyltransferase family 3 protein se...    28   7.2  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    28   7.2  
At3g04160.1 68416.m00440 expressed protein ; expression supporte...    28   7.2  
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain...    28   7.2  
At5g53950.1 68418.m06712 no apical meristem (NAM) family protein...    27   9.6  
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    27   9.6  
At3g52990.1 68416.m05841 pyruvate kinase, putative similar to py...    27   9.6  
At1g56660.1 68414.m06516 expressed protein                             27   9.6  

>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -2

Query: 685 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG--KEIVKSYF 512
           +G Y+ A+   S     + G  I++  K LIE+  + T+D   +L T+ G    +  S  
Sbjct: 498 LGNYDEALQYVSSLEPSQAGVTIEQYGKILIEHKPKETIDILMRLCTEQGIPNGVFLSML 557

Query: 511 --PIQFRVIFTEQTVKLINKRDHHA 443
             P+ F  +F +    L++  + +A
Sbjct: 558 PSPVDFITVFVQHPHSLMHFLERYA 582


>At1g64150.1 68414.m07267 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 370

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 224 GVSGAITVDDTVITRTFRVIELQVLFVFGGHDLEV 328
           G  G +T+   V+ RTF  ++  + F FGG DL +
Sbjct: 197 GALGIMTIISVVLGRTFHYVDEVLPFRFGGTDLPI 231


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 526 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 350
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 349 VLENNRV 329
             E  R+
Sbjct: 136 KDERPRL 142


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 541 PLSITGRRSPWCSSCRFRSDASR 609
           PLS  GR S +C+SC+ R D  +
Sbjct: 869 PLSDIGRSSGFCTSCKIREDEEK 891


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 443 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 535
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g47310.1 68414.m05238 expressed protein
          Length = 395

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = -2

Query: 487 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 308
           T QTV  +  +   A  ++  Q   + + G ++   SKKV+W+  P +E  RV+F++ + 
Sbjct: 286 TRQTVSSVTAK-LKASGMVRFQLEIERSIGKNESVISKKVAWRTKPKIE--RVWFEVTAK 342

Query: 307 EDKQYLK 287
            +   LK
Sbjct: 343 IEGDKLK 349


>At3g62000.1 68416.m06963 O-methyltransferase family 3 protein
           several O-methyltransferases - different species;
           contains Pfam 01596 O-methyltransferase domain
          Length = 278

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
 Frame = -2

Query: 718 VLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKD 539
           V  E+   S+ + +    +A  S  +  K+G +  E++K +I+NG+  + DFA+      
Sbjct: 147 VACERDSNSLEVAKRYYELAGVSHKVNVKQG-LAAESLKSMIQNGEGASYDFAF---VDA 202

Query: 538 GKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALK--LIDQQNHNKIAFGDSKDKTSKKVS 365
            K + + YF +  +++     + + N   H  +   +++      I   + K    K+VS
Sbjct: 203 DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVSDPMVNDAKTISIRNFNKKLMDDKRVS 262

Query: 364 WKFTPV 347
               P+
Sbjct: 263 ISMVPI 268


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 397 DSKDKTSKKVSWKFTPVLENNRVYF-KIMSTEDKQYLKLDNTKGSSDDRIIYGDSTAD 227
           D +++  KK+ WK     E N+VY  +I++++ K  L+    K  +     YG S+++
Sbjct: 277 DMEEERDKKMFWKMYFAFEGNKVYCEQILNSDLKAELEKLKEKEYTLSDYYYGSSSSN 334


>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 611 SREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV 501
           SR      ++E   G  +P  DK WKG  +  + +P+
Sbjct: 563 SRSPIGNDQKESDFGYSIPSTDKQWKGENRADIEYPI 599


>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein low similarity to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 697

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 700 YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 554
           YM + +GEY  AI +C+  L E      K  +KR       N +DFA++
Sbjct: 100 YMQMGLGEYPNAINECNLAL-EASPRFSKALLKRARCYEALNKLDFAFR 147


>At5g53950.1 68418.m06712 no apical meristem (NAM) family protein
           identical to no apical meristem protein CUC2
           (GI:1944132) [Arabidopsis thaliana]; contains Pfam
           PF02365: No apical meristem (NAM) domain;
          Length = 375

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -3

Query: 384 KPARKSPGSLPPCWKTTE---YTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLT 226
           +P+  S  SLPP    T    YT  SC   + ST +++T   +   VS     P T
Sbjct: 214 QPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSCFSTVPTT 269


>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 700 YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 554
           YM + +GEY  AI++C+  L E      K  V+R       N +D+A++
Sbjct: 99  YMQMGLGEYPNAISECNLAL-EASPRYSKALVRRSRCYEALNKLDYAFR 146


>At3g52990.1 68416.m05841 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 59  LGITGNFSAVPQGFTVFVGGHIFIKCHNTVVLSVVDE 169
           +   G   AV +G T+FVG ++F     T V   VDE
Sbjct: 133 INFNGLAKAVKKGDTIFVGQYLFTGSETTSVWLEVDE 169


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = -1

Query: 641 EGKEGRGYQGSREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHK 462
           +GK+ +G +G  E  D ++++EH      + +K  K N++         +  +   +  K
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKK 272

Query: 461 QKGPSRPQVDRPTK 420
           +K  S  + D+  K
Sbjct: 273 EKDESTEKEDKKLK 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,431
Number of Sequences: 28952
Number of extensions: 357018
Number of successful extensions: 1279
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)