Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17r
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    27   0.17 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.3  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 223 EAAAVPAEHPQWDLSDSDTD 164
           EA   P  HP+ +LSDSD D
Sbjct: 35  EAPKSPENHPETELSDSDCD 54


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 256 DQQQDMKLDVKEAAAVPAEHPQWDLSDSDTDNNDQGGNESEF 131
           ++ ++    V     V  E  + + SDS+ +NN + GN  ++
Sbjct: 434 EEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNSCQY 475


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 394 HTLLTAPAHVTALVDTHE 341
           H LLTAP   + L+  HE
Sbjct: 351 HKLLTAPQQCSTLLLRHE 368


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 283 LRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTDNNDQ 152
           L SDS      ++D + D      + +E    DL D D +++D+
Sbjct: 163 LVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDDDDMNDDDR 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,741
Number of Sequences: 336
Number of extensions: 1875
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)