Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    55   1e-08
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    48   1e-06
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   9.1  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
 Frame = -1

Query: 529 EKFQKRLQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVD 350
           E  +K  Q ++ + G  ++      PYF Q  +  WW Y+ D + + ++  P  +T +  
Sbjct: 449 EDAEKYHQSKDVVLGDVETLPYAWAPYFTQHHKTAWWIYVVDPRQNRVIVPPFSITDIPK 508

Query: 349 T-HELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDS 173
           T    ++ F  P   G ++    + S+SY+G D   ++ + VK+ + +  +  +  +SD 
Sbjct: 509 TLRTFRIPFQVPPVAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQEEAVSDL 568

Query: 172 DTDNND 155
           + DN+D
Sbjct: 569 E-DNSD 573


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = -1

Query: 511  LQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQL 332
            +Q    LE   +    V  PYFP +K E+WW  I D K+   L A   +T L  +   ++
Sbjct: 2075 VQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT---LLAIKKIT-LGRSLTTKM 2130

Query: 331  RFTAPRWPGL-YTLACCLRSDSYIGMDQQQDMKLDVKE 221
             F  P    L Y L+C   SDSY+G+D +++ + +V E
Sbjct: 2131 EFVPPAMGTLKYKLSCF--SDSYMGVDYEKEFECNVLE 2166


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +3

Query: 330 RSCNSCVSTSAVTCAGAVSSVCDLRSQM*-----HHQYSCFSCGKYGQ-CTGCELFDRPS 491
           R  N+     +V     V +VCD+ S        + QY C  C KYG+ CT  E  +R  
Sbjct: 35  RRYNTNTIVGSVAYETLVDTVCDVSSNSTFVVKCNRQYPCTRCLKYGEACTYDERDNRKK 94

Query: 492 SRS 500
             S
Sbjct: 95  RHS 97


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -1

Query: 535 QWEKFQKRLQKRERLEGRSKSSHP-VHCP---YFPQE 437
           +W+ +QKR++ ++ L   SK+ H  +  P   YFP++
Sbjct: 132 EWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,443
Number of Sequences: 5004
Number of extensions: 28327
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)