Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d17r
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 64 9e-11
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 58 6e-09
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 36 0.036
02_01_0067 + 487231-487530,487580-487675,487716-487862 35 0.082
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.19
02_05_1127 + 34292894-34293284,34293948-34295443 33 0.25
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 2.3
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.1
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 29 4.1
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 29 4.1
08_02_1293 - 25945888-25946026,25946257-25946315,25946458-259465... 29 4.1
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 29 4.1
11_06_0015 + 19281918-19282043,19282263-19282365,19282514-192825... 28 7.2
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 28 7.2
02_05_0550 + 29904733-29905596 28 7.2
01_02_0081 + 10943368-10943787 28 7.2
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 28 9.5
10_01_0109 + 1338525-1338590,1338744-1339325 28 9.5
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 28 9.5
02_01_0035 - 220036-221419,222050-222801 28 9.5
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 64.5 bits (150), Expect = 9e-11
Identities = 35/96 (36%), Positives = 48/96 (50%)
Frame = -1
Query: 505 KRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRF 326
+RE + + PVH P FP+ K+E WW I DR + LL L ++L F
Sbjct: 2048 EREMADLLQSEAGPVHAPRFPKPKEEGWWLVIGDRSTDQLLAIKR--VKLQKRARVKLEF 2105
Query: 325 TAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
AP G L SDSY+G DQ+ + +DVK+A
Sbjct: 2106 AAPAEAGRKDYMVYLMSDSYLGCDQEYEFAVDVKDA 2141
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 58.4 bits (135), Expect = 6e-09
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = -1
Query: 466 PVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLAC 287
PVH P +P+ K+E WW I D ++ LL AL ++L FTA G
Sbjct: 2094 PVHAPRYPKPKEEGWWLVIGDSSTNQLLAIKR--VALQKRARVKLEFTAASEAGRKEYMI 2151
Query: 286 CLRSDSYIGMDQQQDMKLDVKEA 218
L SDSY+G DQ+ + +DV +A
Sbjct: 2152 YLMSDSYLGCDQEYEFTVDVMDA 2174
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 35.9 bits (79), Expect = 0.036
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -1
Query: 511 LQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTL--LTAPAHVTALVDTHEL 338
L R +++ +S+ P FP+ KQE WW + + +S L L + +V+T
Sbjct: 1887 LSIRLQMKDARRSTSRAFSPRFPKAKQEAWWLVLGNIRSSELYGLKRINFMDRVVNT--- 1943
Query: 337 QLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDM 239
R P + L SDSY+G DQ+ +
Sbjct: 1944 --RMELPAMFDIQETKLILVSDSYLGFDQEYSL 1974
>02_01_0067 + 487231-487530,487580-487675,487716-487862
Length = 180
Score = 34.7 bits (76), Expect = 0.082
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = -1
Query: 466 PVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLAC 287
PVH P +P+ K+E WW + ++L FTA G
Sbjct: 116 PVHAPRYPKPKEEGWW---------------------LKRARVKLEFTAASEAGRKEYMI 154
Query: 286 CLRSDSYIGMDQQQDMKLDVKEA 218
L SD Y+G DQ+ + +DV +A
Sbjct: 155 YLMSDYYLGRDQEYEFTVDVMDA 177
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 303 RPGQRGAVKRSCNSCVSTSAVTCAGAVSSVCDLRSQM*HHQYSCFSCGKYG--QCTGC 470
+PG + V C +C AV C G + + ++ ++ CF C +G C C
Sbjct: 35 KPGAKVKVSAGCKTCRGKGAVECPGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSC 92
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 562 STCRGTRPLTSCATPARPNYPRQSPRRHHPFS 657
S R +RPL P RP +P + RR HP S
Sbjct: 34 SASRSSRPLAPSRAPGRPRHPPRPTRRAHPAS 65
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 550 HRRPSTCRGTRPLTSCATPARPNYPRQSPRRHHP 651
H +T G+ CA P +PN PR P RH P
Sbjct: 4709 HGLGTTRLGSSIFIDCAMPGQPNMPRHQP-RHSP 4741
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -2
Query: 627 TWVV----RTSWGRTARQRTSPATSRRAAMKMTTTSGRS 523
TW V R WGR Q + TS RAA++ +++ RS
Sbjct: 50 TWAVPRRSRLEWGRVEAQNSGARTSCRAALQWLSSTARS 88
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 337 QLRFTAPRWPG-LYTLACCLRSDSYIGMDQQQDMKLDVKEAA 215
++RF+A RW LY + C YI M D+KLD++E A
Sbjct: 537 EVRFSAVRWATTLYDMKHC--PSRYICMLGASDVKLDIREMA 576
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 337 QLRFTAPRWPG-LYTLACCLRSDSYIGMDQQQDMKLDVKEAA 215
++RF+A RW LY + C YI M D+KLD++E A
Sbjct: 533 EVRFSAVRWATTLYDMKHC--PSRYICMLGASDVKLDIREMA 572
>08_02_1293 -
25945888-25946026,25946257-25946315,25946458-25946543,
25946800-25946845,25946953-25947405
Length = 260
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 385 LTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIG 260
L PA V +L++T LQ PG T C L+S ++G
Sbjct: 84 LRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLG 125
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 CNSCVSTSAVTCAGAVSSVCDLRSQM*HHQYSCFSC-GKYGQCTGCELFDRPSSRSRFC 509
C C + S V C VCD + Y+C C G+Y C+ C+ FD R R C
Sbjct: 38 CRHCHNESTVICL-----VCDTEQPVAQVCYNCGVCMGEYF-CSACKFFD-DDVRCRCC 89
>11_06_0015 +
19281918-19282043,19282263-19282365,19282514-19282581,
19282687-19282842,19282950-19283078,19283161-19283278,
19283368-19283462,19283579-19283731,19283822-19283917,
19284095-19284196
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 265 IGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTDNNDQGGNESEF 131
IG+D Q + D+ AAA E Q D D D D++D ES+F
Sbjct: 103 IGLDNTQ-VFADLDLAAASATEFAQED-DDDDDDDDDSDDEESDF 145
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 532 TGRRHLHRRPSTCRGTRPLTSCATPARPNYPRQS 633
+GRR LHR CR RP+ A P+ P P S
Sbjct: 10 SGRRLLHR----CRRPRPVVQAAGPSAPYRPSSS 39
>02_05_0550 + 29904733-29905596
Length = 287
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 612 TSWGRTARQRTSPATSRRAAMKMTTTSGRSSRRDCRNGND 493
T W R+ + ATS AA ++ + R+ R RNG D
Sbjct: 73 TEWKDALREALADATSDAAAARIRAEAERAVRDAVRNGGD 112
>01_02_0081 + 10943368-10943787
Length = 139
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = +3
Query: 321 AVKRSCNSCVSTSAVTCAGAVSSVCDLRSQM*HHQYSCFSCGKYGQCTGCELF-----DR 485
A+ R C + A C + + H C CG+ G C GC + D
Sbjct: 46 ALCRRCGGGATAMAALCRRRGGGATAMAALCRRHGGGCDGCGRGGGCDGCGRYPPMCEDE 105
Query: 486 PSS 494
PSS
Sbjct: 106 PSS 108
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 309 GQRGAVKRSCNSCVSTSAVTCAGAVSSVCDLRSQM*HHQYSC 434
G +GA K+ C+ C V V CD+ H + C
Sbjct: 374 GVKGAAKKVCSKCFEKGHVADDCVVEVYCDICDSFDHVSHKC 415
>10_01_0109 + 1338525-1338590,1338744-1339325
Length = 215
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -1
Query: 502 RERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTH--ELQLR 329
R + +G + S P+ PY P E + Y W D + AL+D H E+++
Sbjct: 47 RLKRKGEREHSDPI-LPYLPDEDEPYVWLAEADMHEND--------NALIDVHKDEIRVM 97
Query: 328 FTAP 317
TAP
Sbjct: 98 LTAP 101
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 532 TGRRHLHRRPSTCRGTRPLTSCATPARPNYPRQSPRRHHPFSLVP 666
+G R+ R PS R R S P R PRRHH +P
Sbjct: 21 SGGRYRRRSPSPRRHHRAPPSNPNPHRDRRTPDRPRRHHHEDSLP 65
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 535 QWEKFQKRLQKRERLEGRSKSSHPVHCPYFPQEKQEY 425
+WE K +K + G+ + +H CPYF + + Y
Sbjct: 577 KWENINKYFRKAKE-SGKKRPAHAKTCPYFDELDRLY 612
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,070
Number of Sequences: 37544
Number of extensions: 219119
Number of successful extensions: 1095
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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