Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d17r
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11026| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0) 50 2e-06
SB_27274| Best HMM Match : Sec63 (HMM E-Value=1.9e-12) 34 0.11
SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3) 31 0.78
SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7) 31 0.78
SB_55749| Best HMM Match : SRCR (HMM E-Value=0) 31 1.4
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 29 5.5
>SB_11026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = -1
Query: 343 ELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL-SDSDT 167
+++L+F AP PG Y LRSDSY+ D Q+ K+ V+EA E QWD +D D
Sbjct: 26 QVELKFQAPEKPGTYYYTVTLRSDSYLDCDVHQNFKIVVEEAKEF--ETKQWDFDTDEDN 83
Query: 166 DNNDQGGNESEF 131
+ D +SEF
Sbjct: 84 QDGDMESGDSEF 95
>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 1047
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/79 (35%), Positives = 39/79 (49%)
Frame = -1
Query: 463 VHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACC 284
VH P FP+ + E WW + D + L+ A + + T L F P G L
Sbjct: 955 VHAPCFPKVQTEGWWLVLGDTDTGELM-ALKRLGPVQGTTTATLSFYTPEEEGRKILTVY 1013
Query: 283 LRSDSYIGMDQQQDMKLDV 227
L SDSY+G+DQQ D+ +V
Sbjct: 1014 LMSDSYLGIDQQYDLFFEV 1032
>SB_27274| Best HMM Match : Sec63 (HMM E-Value=1.9e-12)
Length = 176
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 526 KFQKRLQKRE-RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSH 392
+ Q+ +K E LE + V P+FPQ+++E WW I D K++
Sbjct: 105 QMQRSPRKHEVDLEREDEQPGAVIAPFFPQKREEGWWLVIGDTKAN 150
>SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3)
Length = 540
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 280 RSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTDNNDQGGNES 137
R+ G+ + Q+ LD K+A A + D+S S DN + G +S
Sbjct: 491 RTSDERGLPEVQETVLDTKDALASSTNEAEGDISSSRVDNQRERGTDS 538
>SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)
Length = 481
Score = 31.5 bits (68), Expect = 0.78
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = -1
Query: 409 CDRKSHTLLTAPAHVTALVDTHE-----LQLRFTAPR--WPGLYTLACCLRSDSYIGMDQ 251
CD + +L AHVT ++DTH+ L L P W GL LACC ++ G
Sbjct: 256 CDVINGAMLRDKAHVTLVIDTHKDGSKTLVLTLHPPEKVWQGL-ELACCCEVVAW-GFTT 313
Query: 250 QQDMKLDVKEA 218
+ + KLDV+ A
Sbjct: 314 RSE-KLDVQLA 323
>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1224
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 313 WPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQW 188
+PG+ + +CC R G+ QD++ E + + H W
Sbjct: 1114 YPGVSSTSCCARYGESSGLIAMQDLECTGTERSLITCRHSDW 1155
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 529 PTGRRHLHRRPSTCRGTRPLTSCATPARPNYPRQSPRRHHPFSLVP 666
P+GR R PS C +R L S P+R R+ P R P +P
Sbjct: 139 PSGRLPSRRLPSGCLPSRRLPSGRLPSRRLPSRRLPSRRLPSGCLP 184
>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 SPTGRRHLHRRPSTCRGTRPLTSCATPARPNYPRQ-SPRRHHPFSLVP 666
+PT R +H+R T R RP + T AR + R+ PR H P + P
Sbjct: 109 TPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPVTPTP 156
>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 SPTGRRHLHRRPSTCRGTRPLTSCATPARPNYPRQ-SPRRHHPFSLVP 666
+PT R +H+R T R RP + T AR + R+ PR H P + P
Sbjct: 109 TPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPVTPTP 156
>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 630 LTWVVRTSWGRTARQRTSPATSRRAAMKMTTTS 532
L +V R W +T TSPA +RR ++ + TS
Sbjct: 353 LNFVRRHLWDKTLSMSTSPAHNRRLSLSLALTS 385
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 306 PGQRGAVKRSCNSCVSTSAVTCAGAVSSVC 395
PG+RGA K+ C+SC ++A+ A V + C
Sbjct: 167 PGKRGAPKKRCHSCNDSNAL--ARRVCTTC 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,538
Number of Sequences: 59808
Number of extensions: 273320
Number of successful extensions: 1173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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