Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d17r
(775 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048287-1|AAH48287.1| 760|Homo sapiens SEC63 homolog (S. cerev... 152 1e-36
BC047221-1|AAH47221.1| 760|Homo sapiens SEC63 homolog (S. cerev... 152 1e-36
AL024507-3|CAI19745.1| 760|Homo sapiens SEC63 homolog (S. cerev... 152 1e-36
AJ011779-1|CAB46275.1| 760|Homo sapiens SEC63 protein protein. 152 1e-36
AF100141-1|AAC83375.1| 760|Homo sapiens SEC63 protein. 152 1e-36
BC131784-1|AAI31785.1| 595|Homo sapiens ASCC3L1 protein protein. 61 4e-09
BC112891-1|AAI12892.1| 1887|Homo sapiens ASCC3L1 protein protein. 61 4e-09
BC007577-1|AAH07577.1| 1308|Homo sapiens ASCC3L1 protein protein. 61 4e-09
BC001417-1|AAH01417.4| 494|Homo sapiens ASCC3L1 protein protein. 61 4e-09
AY572488-1|AAS78571.1| 2136|Homo sapiens 200 kDa U5 snRNP-specif... 61 4e-09
AK024391-1|BAB14906.1| 1811|Homo sapiens protein ( Homo sapiens ... 61 4e-09
AF085356-1|AAD40191.1| 595|Homo sapiens putative RNA helicase p... 61 4e-09
AB018331-1|BAA34508.2| 2026|Homo sapiens KIAA0788 protein protein. 61 4e-09
Z70200-1|CAA94089.1| 1701|Homo sapiens U5 snRNP-specific 200kD p... 60 9e-09
BC065924-1|AAH65924.1| 1821|Homo sapiens ASCC3L1 protein protein. 56 1e-07
Z86062-1|CAI19454.1| 2193|Homo sapiens RP1-121G13.4 protein. 51 4e-06
AL591585-1|CAH73862.1| 2193|Homo sapiens RP1-121G13.4 protein. 51 4e-06
AL356122-1|CAI16190.1| 2193|Homo sapiens RP1-121G13.4 protein. 51 4e-06
AL133338-2|CAI21439.1| 2193|Homo sapiens RP1-121G13.4 protein. 51 4e-06
AL121965-1|CAI19627.1| 2193|Homo sapiens RP1-121G13.4 protein. 51 4e-06
AY013288-1|AAG45474.1| 1917|Homo sapiens ASC-1 complex subunit P... 44 5e-04
AJ223948-1|CAA11679.1| 1257|Homo sapiens RNA helicase protein. 44 5e-04
AK090671-1|BAC03499.1| 625|Homo sapiens protein ( Homo sapiens ... 33 1.5
AF316032-1|AAK71862.1| 637|Homo sapiens membrane protein palmit... 31 3.5
AC007279-2|AAY15057.1| 637|Homo sapiens unknown protein. 31 3.5
BC132785-1|AAI32786.1| 630|Homo sapiens MPP4 protein protein. 30 8.0
>BC048287-1|AAH48287.1| 760|Homo sapiens SEC63 homolog (S.
cerevisiae) protein.
Length = 760
Score = 152 bits (369), Expect = 1e-36
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 535 QWEKFQKRLQKRER--LEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVT 362
+W++ Q+ +Q++ER LE +SK +HPV+ YFP+EKQE+WW YI DRK TL++ P HV
Sbjct: 612 EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVC 671
Query: 361 ALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL 182
L DT E++L+F AP PG Y LRSDSY+G+DQ + +KL+V EA VP HPQWD
Sbjct: 672 TLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDT 731
Query: 181 S-DSDTDNNDQGGNESEF 131
+ + D D D G E F
Sbjct: 732 AIEGDEDQEDSEGFEDSF 749
>BC047221-1|AAH47221.1| 760|Homo sapiens SEC63 homolog (S.
cerevisiae) protein.
Length = 760
Score = 152 bits (369), Expect = 1e-36
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 535 QWEKFQKRLQKRER--LEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVT 362
+W++ Q+ +Q++ER LE +SK +HPV+ YFP+EKQE+WW YI DRK TL++ P HV
Sbjct: 612 EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVC 671
Query: 361 ALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL 182
L DT E++L+F AP PG Y LRSDSY+G+DQ + +KL+V EA VP HPQWD
Sbjct: 672 TLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDT 731
Query: 181 S-DSDTDNNDQGGNESEF 131
+ + D D D G E F
Sbjct: 732 AIEGDEDQEDSEGFEDSF 749
>AL024507-3|CAI19745.1| 760|Homo sapiens SEC63 homolog (S. cerevisiae
protein.
Length = 760
Score = 152 bits (369), Expect = 1e-36
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 535 QWEKFQKRLQKRER--LEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVT 362
+W++ Q+ +Q++ER LE +SK +HPV+ YFP+EKQE+WW YI DRK TL++ P HV
Sbjct: 612 EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVC 671
Query: 361 ALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL 182
L DT E++L+F AP PG Y LRSDSY+G+DQ + +KL+V EA VP HPQWD
Sbjct: 672 TLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDT 731
Query: 181 S-DSDTDNNDQGGNESEF 131
+ + D D D G E F
Sbjct: 732 AIEGDEDQEDSEGFEDSF 749
>AJ011779-1|CAB46275.1| 760|Homo sapiens SEC63 protein protein.
Length = 760
Score = 152 bits (369), Expect = 1e-36
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 535 QWEKFQKRLQKRER--LEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVT 362
+W++ Q+ +Q++ER LE +SK +HPV+ YFP+EKQE+WW YI DRK TL++ P HV
Sbjct: 612 EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVC 671
Query: 361 ALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL 182
L DT E++L+F AP PG Y LRSDSY+G+DQ + +KL+V EA VP HPQWD
Sbjct: 672 TLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDT 731
Query: 181 S-DSDTDNNDQGGNESEF 131
+ + D D D G E F
Sbjct: 732 AIEGDEDQEDSEGFEDSF 749
>AF100141-1|AAC83375.1| 760|Homo sapiens SEC63 protein.
Length = 760
Score = 152 bits (369), Expect = 1e-36
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 535 QWEKFQKRLQKRER--LEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVT 362
+W++ Q+ +Q++ER LE +SK +HPV+ YFP+EKQE+WW YI DRK TL++ P HV
Sbjct: 612 EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVC 671
Query: 361 ALVDTHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDL 182
L DT E++L+F AP PG Y LRSDSY+G+DQ + +KL+V EA VP HPQWD
Sbjct: 672 TLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDT 731
Query: 181 S-DSDTDNNDQGGNESEF 131
+ + D D D G E F
Sbjct: 732 AIEGDEDQEDSEGFEDSF 749
>BC131784-1|AAI31785.1| 595|Homo sapiens ASCC3L1 protein protein.
Length = 595
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 499 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 556
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 557 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 588
>BC112891-1|AAI12892.1| 1887|Homo sapiens ASCC3L1 protein protein.
Length = 1887
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 1791 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1848
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1849 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 1880
>BC007577-1|AAH07577.1| 1308|Homo sapiens ASCC3L1 protein protein.
Length = 1308
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 1212 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1269
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1270 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 1301
>BC001417-1|AAH01417.4| 494|Homo sapiens ASCC3L1 protein protein.
Length = 494
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 398 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 455
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 456 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 487
>AY572488-1|AAS78571.1| 2136|Homo sapiens 200 kDa U5 snRNP-specific
spliceosomal protein protein.
Length = 2136
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 2040 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 2097
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 2098 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129
>AK024391-1|BAB14906.1| 1811|Homo sapiens protein ( Homo sapiens cDNA
FLJ14329 fis, clone PLACE4000259, highly similar to
H.sapiens gene for U5 snRNP-specific 200kD protein. ).
Length = 1811
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 1715 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1772
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1773 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 1804
>AF085356-1|AAD40191.1| 595|Homo sapiens putative RNA helicase
protein.
Length = 595
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 499 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 556
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 557 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 588
>AB018331-1|BAA34508.2| 2026|Homo sapiens KIAA0788 protein protein.
Length = 2026
Score = 61.3 bits (142), Expect = 4e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 1930 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1987
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1988 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2019
>Z70200-1|CAA94089.1| 1701|Homo sapiens U5 snRNP-specific 200kD
protein protein.
Length = 1701
Score = 60.1 bits (139), Expect = 9e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E WW I D KS++L++ L +++L F AP
Sbjct: 1605 QLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1662
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1663 ATGGRHN-TLYFMSDAYMGCDQEYKFSVDVKEA 1694
>BC065924-1|AAH65924.1| 1821|Homo sapiens ASCC3L1 protein protein.
Length = 1821
Score = 56.0 bits (129), Expect = 1e-07
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = -1
Query: 496 RLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAP 317
+LE + + PV P FPQ+++E W I D KS++L++ L +++L F AP
Sbjct: 1725 QLEREEEVTGPVIAPLFPQKREEGWLVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP 1782
Query: 316 RWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
G + SD+Y+G DQ+ +DVKEA
Sbjct: 1783 A-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 1814
>Z86062-1|CAI19454.1| 2193|Homo sapiens RP1-121G13.4 protein.
Length = 2193
Score = 51.2 bits (117), Expect = 4e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 2096 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 2154
Query: 274 DSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTD 164
D Y+G+DQQ D+ L+V +A+ + +SDS TD
Sbjct: 2155 DCYLGLDQQYDIYLNVTQASL--SAQVNTKVSDSLTD 2189
>AL591585-1|CAH73862.1| 2193|Homo sapiens RP1-121G13.4 protein.
Length = 2193
Score = 51.2 bits (117), Expect = 4e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 2096 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 2154
Query: 274 DSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTD 164
D Y+G+DQQ D+ L+V +A+ + +SDS TD
Sbjct: 2155 DCYLGLDQQYDIYLNVTQASL--SAQVNTKVSDSLTD 2189
>AL356122-1|CAI16190.1| 2193|Homo sapiens RP1-121G13.4 protein.
Length = 2193
Score = 51.2 bits (117), Expect = 4e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 2096 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 2154
Query: 274 DSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTD 164
D Y+G+DQQ D+ L+V +A+ + +SDS TD
Sbjct: 2155 DCYLGLDQQYDIYLNVTQASL--SAQVNTKVSDSLTD 2189
>AL133338-2|CAI21439.1| 2193|Homo sapiens RP1-121G13.4 protein.
Length = 2193
Score = 51.2 bits (117), Expect = 4e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 2096 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 2154
Query: 274 DSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTD 164
D Y+G+DQQ D+ L+V +A+ + +SDS TD
Sbjct: 2155 DCYLGLDQQYDIYLNVTQASL--SAQVNTKVSDSLTD 2189
>AL121965-1|CAI19627.1| 2193|Homo sapiens RP1-121G13.4 protein.
Length = 2193
Score = 51.2 bits (117), Expect = 4e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 2096 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 2154
Query: 274 DSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTD 164
D Y+G+DQQ D+ L+V +A+ + +SDS TD
Sbjct: 2155 DCYLGLDQQYDIYLNVTQASL--SAQVNTKVSDSLTD 2189
>AY013288-1|AAG45474.1| 1917|Homo sapiens ASC-1 complex subunit P200
protein.
Length = 1917
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 1829 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 1887
Query: 274 DSYIGMDQQQD 242
D Y+G+DQQ D
Sbjct: 1888 DCYLGLDQQYD 1898
>AJ223948-1|CAA11679.1| 1257|Homo sapiens RNA helicase protein.
Length = 1257
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = -1
Query: 454 PYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLACCLRS 275
P FP+ K E W+ + + L+ A V + + H L F P PG Y S
Sbjct: 1169 PRFPKSKDEGWFLILGEVDKRELI-ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMS 1227
Query: 274 DSYIGMDQQQD 242
D Y+G+DQQ D
Sbjct: 1228 DCYLGLDQQYD 1238
>AK090671-1|BAC03499.1| 625|Homo sapiens protein ( Homo sapiens
cDNA FLJ33352 fis, clone BRACE2005087, weakly similar to
PRE-MRNA SPLICING HELICASE BRR2 (EC 3.6.1.-). ).
Length = 625
Score = 32.7 bits (71), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 343 ELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEA 218
+++L F AP G + SD+Y+G DQ+ +DVKEA
Sbjct: 578 KVKLDFVAPA-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 618
>AF316032-1|AAK71862.1| 637|Homo sapiens membrane protein
palmitoylated 4 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -1
Query: 385 LTAPAHVTALVDT-HELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAV 209
++ PA LV + H L+ + W Y CL+S I M+++ DMK+D K V
Sbjct: 292 ISDPATCAGLVPSNHLLKRKQREFWWSQPYQPHTCLKSTLSISMEEEDDMKIDEK---CV 348
Query: 208 PAEHPQWDLSDSDTDNNDQGGNESEF 131
A+ ++ + D + G +F
Sbjct: 349 EADEETFESEELSEDKEEFVGYGQKF 374
>AC007279-2|AAY15057.1| 637|Homo sapiens unknown protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -1
Query: 385 LTAPAHVTALVDT-HELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAV 209
++ PA LV + H L+ + W Y CL+S I M+++ DMK+D K V
Sbjct: 292 ISDPATCAGLVPSNHLLKRKQREFWWSQPYQPHTCLKSTLSISMEEEDDMKIDEK---CV 348
Query: 208 PAEHPQWDLSDSDTDNNDQGGNESEF 131
A+ ++ + D + G +F
Sbjct: 349 EADEETFESEELSEDKEEFVGYGQKF 374
>BC132785-1|AAI32786.1| 630|Homo sapiens MPP4 protein protein.
Length = 630
Score = 30.3 bits (65), Expect = 8.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 385 LTAPAHVTALVDT-HELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVK 224
++ PA LV + H L+ + W Y CL+S I M+++ DMK+D K
Sbjct: 292 ISDPATCAGLVPSNHLLKRKQREFWWSQPYQPHTCLKSTLSISMEEEDDMKIDEK 346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,173,841
Number of Sequences: 237096
Number of extensions: 1206476
Number of successful extensions: 4379
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4362
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -