Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17r
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical ...    89   4e-18
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    59   4e-09
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    46   3e-05
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    31   0.91 

>AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6b protein.
          Length = 752

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
 Frame = -1

Query: 505 KRERLEGRSKSSHPVHCPYFPQEKQEYWWCYIC----DRKSHTLLTAPAHVTALVDTHEL 338
           K+   E ++  +H VH P+FP EK E+WW  +       KS  LLT P  V  L+D   +
Sbjct: 618 KKSIFETKNTQTHTVHAPFFPTEKFEWWWITVAYVDKKEKSRQLLTFPQLVKTLIDEQTI 677

Query: 337 QLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSD 170
            +RF AP   G+YT    ++SDSY+  +   D K+DVKEA  V  +H  +   D +
Sbjct: 678 DIRFAAPPHKGIYTYNLSVKSDSYMDAEYSVDFKIDVKEAKFVEIKHDDYVDEDDE 733


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = -1

Query: 466  PVHCPYFPQE-KQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWPGLYTLA 290
            PV  P FPQ+ K+E WW  I D +S+ LLT    V  + +   +QL F APR PG +   
Sbjct: 2051 PVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLV--INEKSSVQLDFAAPR-PGHHKFK 2107

Query: 289  CCLRSDSYIGMDQQQDMKLDVKE 221
                SDSY+G DQ+ D+   V+E
Sbjct: 2108 LFFISDSYLGADQEFDVAFKVEE 2130


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = -1

Query: 487  GRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQLRFTAPRWP 308
            G  K++  +H P +P+ KQ  W   + +  +  +L       +       +L   AP   
Sbjct: 1711 GPGKNNSSMHLPQWPKPKQAGWIIVVGNVSADMILNTTTVTGSHSTRSTAKLDIRAPATK 1770

Query: 307  GLYTLACCLRSDSYIGMDQQQDMKLDV 227
            G + LA  + SD Y+G+DQ+  ++LDV
Sbjct: 1771 GNHELAVLILSDCYLGIDQEYTLRLDV 1797


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 484 RSKSSHPVHCPYFPQEKQEYWWCYICDRKSH 392
           R K SHP+  P    E+ E  WC+ C+ KS+
Sbjct: 409 RIKRSHPMMAPGSEDEEDEMHWCF-CNEKSY 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,812,004
Number of Sequences: 27780
Number of extensions: 183136
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)