Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17r
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   9.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.6  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   9.6  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 481 SKSSHPVHCPYFPQEKQEYWWCYICDR 401
           SK+S   H      E+QE + C IC+R
Sbjct: 17  SKASLKRHVADKHAERQEEYRCVICER 43


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 301 YTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEH 197
           Y +AC L  D+YI   Q   M L + +A +    H
Sbjct: 542 YCVACGLHRDTYIHAQQIAWMALKMIQACSHHLTH 576


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 LPRPRHLL*IHFRCLPG 156
           +P PR+++ +  RC PG
Sbjct: 48  VPEPRYIIDVPPRCPPG 64


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 CNSCVSTSAVTCAGAVSSVC 395
           C+S VS   + C  ++ S+C
Sbjct: 111 CDSWVSLDILLCTASILSLC 130


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 LPRPRHLL*IHFRCLPG 156
           +P PR+++ +  RC PG
Sbjct: 48  VPEPRYIIDVPPRCPPG 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,932
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)