Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17f
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    26   0.22 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   3.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.4  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.4  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 460 LETVYDMISLFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQV 326
           L   Y   + + P+LH   GP  H        + T   C P++QV
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCNPQLQV 119


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 448 YDMISLFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQVAPIQIL*QVSQRNFSRFCK 269
           YD   +  P  H++    FH   + T  N T +     +++    +L Q  Q +   FC 
Sbjct: 432 YDFYKMNHPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQRHQIDAKMFCN 491

Query: 268 AAIV 257
            + V
Sbjct: 492 ESSV 495


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 604 CQSSLLQVHQGYHIFPNYVSLH 539
           CQ++ ++  Q  + F N+VS H
Sbjct: 295 CQTATMEEKQELYEFSNFVSQH 316


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 460 LETVYDMISLFQPELHQEVGPKFH 389
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 460 LETVYDMISLFQPELHQEVGPKFH 389
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 389 MKFWAYLLVQLRLK*RNHIVNSL*FCILTKKLVT 490
           M+ W YLL  L     N     L  C L   +VT
Sbjct: 36  MRSWYYLLTNLTYNNTNRKYYWLNVCCLNLSIVT 69


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 460 LETVYDMISLFQPELHQEVGPKFH 389
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 178 KKRKEDPAKLAERCQCPNCVSKQLIIEQS 264
           K+RK++  ++ E+ Q  N      + EQS
Sbjct: 211 KERKQNKKRIEEKSQIDNLFHNGFMQEQS 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,041
Number of Sequences: 336
Number of extensions: 3419
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)