Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d17f
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 109 4e-25
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 65 9e-12
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 61 1e-10
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 60 2e-10
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 60 3e-10
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 57 2e-09
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 56 6e-09
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 53 4e-08
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 52 9e-08
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 51 2e-07
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 49 6e-07
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 47 2e-06
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 47 3e-06
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 46 4e-06
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 45 8e-06
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 44 2e-05
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 43 3e-05
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 43 4e-05
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 38 9e-04
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 38 0.001
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 37 0.002
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 34 0.019
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 2.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.9
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 3.9
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.8
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 109 bits (261), Expect = 4e-25
Identities = 64/191 (33%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Frame = +1
Query: 82 KFEYDESGSTFFYFVLSFLALILVPATF--YYWPKKRKEDPAKLAERCQCPNCVSKQLII 255
+++YDE G F F+L + ++P T+ P KE K R K L +
Sbjct: 4 EYKYDEQGIFFPVFLLVGTSCCVLPLTYSTILGPSASKE---KKNVRDPFQKYRPKDLKV 60
Query: 256 EQSQPYKSVKNFFVKLAIVSGWVLLGFLAYKVSQFDYEMSNFDPYEILGLPPGATQAEIK 435
++ ++ ++ F ++ GW+ +GFL+YK++ +++ +DPYEILG+ G + +++
Sbjct: 61 QRKSIFR-LRYIF----LILGWLAIGFLSYKIANSRLKLNIWDPYEILGIAKGTSVDDVR 115
Query: 436 KSYRKQSLVLHPDK------ETGD--EKAFMRLTKAYQALTDDEARRNWEKYGNPDGPGA 591
+ Y++ S+ HPDK T + EK ++ +T AY+ALTDD+ R N+ YG PD P
Sbjct: 116 RHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITNAYRALTDDKTRENYALYGTPDVPQH 175
Query: 592 MSFGIALPSWI 624
+S GIALP WI
Sbjct: 176 ISVGIALPKWI 186
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 64.9 bits (151), Expect = 9e-12
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +1
Query: 388 YEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKAFMRLTKAYQALTDDEARRNWEKY 567
Y+ L + P A++AE+KK+YRK +L HPDK EK F ++ AY+ L+D + R+ +++Y
Sbjct: 8 YDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYDQY 67
Query: 568 GNPDGPGA 591
G +G A
Sbjct: 68 GITEGNAA 75
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Frame = +1
Query: 373 SNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKA---FMRLTKAYQALTDDE 543
+NF +ILG+ A+++EI+K+YR+ + HPDK G+E+A F+ + KA++ L+D E
Sbjct: 4 NNFSQKQILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPE 63
Query: 544 ARRNWEKY------GNPDGPG 588
R+ ++ Y G P GPG
Sbjct: 64 QRKIYDAYGEEGLNGQPGGPG 84
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +1
Query: 388 YEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKAFMRLTKAYQALTDDEARRNWEKY 567
YE+L + A+QAE+KK+YRK +L HPDK F +++AY+ L D+E R ++++
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYDRF 67
Query: 568 G 570
G
Sbjct: 68 G 68
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 59.7 bits (138), Expect = 3e-10
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = +1
Query: 382 DPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGD---EKAFMRLTKAYQALTDDEARR 552
D Y+ILG+ AT EIKK+YRK +LV HPDK G+ E F + +AY L+D E+RR
Sbjct: 349 DHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAYTILSDPESRR 408
Query: 553 NWE 561
++
Sbjct: 409 RFD 411
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 376 NFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKE--TGDEKAFMRLTKAYQALTDDEAR 549
N YEIL L T EIKKSY+K +L LHPDK ++AF ++KA+Q L+D R
Sbjct: 111 NHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPSADEAFKMVSKAFQVLSDPNLR 170
Query: 550 RNWEKYG 570
++++ G
Sbjct: 171 AHYDRTG 177
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 55.6 bits (128), Expect = 6e-09
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Frame = +1
Query: 388 YEILGLPPGATQAEIKKSYRKQSLVLHPDKETGD----EKAFMRLTKAYQALTDDEARRN 555
Y++LG+ AT +IKK+YRK ++ HPDK D + F ++++AYQ L D++ R
Sbjct: 10 YDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLRSQ 69
Query: 556 WEKYG 570
++++G
Sbjct: 70 YDQFG 74
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 52.8 bits (121), Expect = 4e-08
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +1
Query: 367 EMSNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKA-----FMRLTKAYQAL 531
E +++ Y LGLP AT +IK+SY + S + HPD+ T D+KA F + AY+ L
Sbjct: 3 EADSWELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVL 62
Query: 532 TDDEARRNWEKYG 570
+D + ++ +G
Sbjct: 63 SDPSKKEIYDNFG 75
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 51.6 bits (118), Expect = 9e-08
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +1
Query: 382 DPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKA----FMRLTKAYQALTDDEAR 549
D Y+IL + A IKKSYR+ +++ HPDK + +A F +L +AYQ L+D + R
Sbjct: 9 DYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVLSDPKLR 68
Query: 550 RNWEKYG 570
++K G
Sbjct: 69 EKYDKLG 75
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 367 EMSNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKA---FMRLTKAYQALTD 537
E + D YE+LG+ A EI +++RK SL HPDK D KA F L AY AL D
Sbjct: 4 EGDSIDYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALID 63
Query: 538 DEARRNWE 561
+ R+ ++
Sbjct: 64 VQLRKAYD 71
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Frame = +1
Query: 358 FDYEMSNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEK------AFMRLTKA 519
+ + + DPY +LG+ A+ I+++YRK++L HPD+ +EK F ++ A
Sbjct: 23 YSFIKMDIDPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIA 82
Query: 520 YQALTDDEARRNWEKYG 570
Y L+D + R++++K G
Sbjct: 83 YGVLSDKKRRKHYDKTG 99
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 47.2 bits (107), Expect = 2e-06
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Frame = +1
Query: 388 YEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEK-----AFMRLTKAYQALTDDEARR 552
Y+IL + A+ EIKKSY++ +L+ HPDK EK F + +AY L D E+R
Sbjct: 8 YDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDPESRE 67
Query: 553 NWEKYG-NPDGPGAMSFGIAL 612
++ YG N D G+ L
Sbjct: 68 MYDMYGMNSDSNSQFDGGVNL 88
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 382 DPYEILGLPPGATQAEIKKSYRKQSLVLHPD--KETGDEKAFMRLTKAYQALTDDEARRN 555
DPY+ LG+ A+ +EIK +Y K + HPD + + F+ + +AY+ L D + ++
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKA 145
Query: 556 WEKYG 570
++ YG
Sbjct: 146 FDTYG 150
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 46.0 bits (104), Expect = 4e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Frame = +1
Query: 355 QFDYEMSNF--DPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEK---AFMRLTKA 519
+ D +S+F + Y++L + PG + +I+ YRK+SL++HPDK + K AF L KA
Sbjct: 20 EIDRILSSFKLNAYDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKA 79
Query: 520 YQALTDDEARRN 555
L +D+ R +
Sbjct: 80 ESDLVNDKIRES 91
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +1
Query: 376 NFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDE---KAFMRLTKAYQALTDDEA 546
+ D YEIL + + EIK +YRK +L HPD+ G E + F ++ AY L++D+
Sbjct: 7 DMDCYEILQVNHDSDLQEIKANYRKLALQYHPDRNPGIEDYNEIFSQINAAYNILSNDDK 66
Query: 547 RRNWEK 564
R+ EK
Sbjct: 67 RKWHEK 72
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 388 YEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKAFMRLTKAYQALTDDEARRNWEKY 567
YE+L +P A+ EI ++YRK+S++ HPDK ++ + L L + E R+ ++ +
Sbjct: 42 YELLEVPTKASIKEINRAYRKKSILYHPDKNPKSKELYTLLGLIVNILRNTETRKRYDYF 101
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +1
Query: 382 DPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDEKA-----FMRLTKAYQALTDDEA 546
D Y IL + P A+ EIK +Y+K +L HPD+ + +A F + +AY L+D+
Sbjct: 4 DYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNSR 63
Query: 547 RRNWEK 564
R +++
Sbjct: 64 RAQYDR 69
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 373 SNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDE----KAFMRLTKAYQALTDD 540
++ D Y IL L AT +I+K Y +L HPD+ GDE K F RL A++ L+D
Sbjct: 9 TSVDYYAILKLQKNATFQQIRKQYLFLALQYHPDRNPGDEERAVKRFQRLQLAHEVLSDA 68
Query: 541 EAR 549
R
Sbjct: 69 TKR 71
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 38.3 bits (85), Expect = 9e-04
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +1
Query: 382 DPYEILGLPPGATQAEIKKSYRKQSLVLHPDKETGDE----KAFMRLTKAYQALTDDEAR 549
D Y ILG ++ EI++ Y K L HPD+ G E F + KA++ L D + R
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPGREAEVLPQFQLIQKAHEVLKDPKLR 71
Query: 550 -----RNWEKYGNPDG 582
R + G PDG
Sbjct: 72 ELFDQRRLLEAGRPDG 87
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 367 EMSNFDPYEILGLPPGATQAE---IKKSYRKQSLVLHPDKET-----GDEKAFMRLTKAY 522
E D Y +LGL +A+ IKK++ K+ L HPDK+ D+ F + KAY
Sbjct: 92 EWKQQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAY 151
Query: 523 QALTDDEARRNWE 561
+ L+D RR ++
Sbjct: 152 EILSDPVRRRQFD 164
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +1
Query: 388 YEILGLPPGATQA--EIKKSYRKQSLVLHPDK---ETGDEKAFMRLTKAYQALTDDEARR 552
Y +L L G T EIK++YRK L+ HPDK + ++ +AYQ L+ ++ R+
Sbjct: 4 YSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKDRQ 63
Query: 553 NWE 561
++
Sbjct: 64 QYQ 66
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 367 EMSNFDPYEILGLPPGATQAEIKKSYRKQSLVLHPDK 477
E+ + PYEIL LP T +IK+ Y + HPDK
Sbjct: 27 ELKSLTPYEILELPRTCTANDIKRKYIELVKKHHPDK 63
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 445 RKQSLVLHPDKETGDEKAFMRLTKAYQALTDDEARRNWEKY 567
+K SL+ K D + ++ K + T ++A++NW KY
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKY 172
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 135 SCINISTSYILLLA*KTKRRSCKISRKMSVSKLC*QTTNHRTIAALQKREKFLCETCYSI 314
S + I+ Y + A + + K S + C T+ RT+A+L + E E C S+
Sbjct: 948 SPVIITAGYYRVRALDQVQEKLSAAYKESAAFACESTSAIRTVASLNREENVFAEYCDSL 1007
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 103 GSTFFYFVLSFLALILVP 156
G+ FF +++FLALI++P
Sbjct: 1836 GTMFFLLLIAFLALIIIP 1853
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 151 VPATFYYWPKKRKEDPAKLAERCQCPNCVSKQLIIEQSQPYKSVK 285
+P TF PKK K++PA L+ R +CV + + + Y++V+
Sbjct: 654 LPITF---PKKLKDNPAYLSFRSSRGHCVYGEDVFVGYKYYEAVE 695
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 169 YWPKKRKEDPAKLAERCQCPNCVSKQLIIEQSQPYK 276
Y P++ E A++A++ P S+ +QSQP++
Sbjct: 158 YSPEESSESQAEVADQQTGPYSTSEYAGAQQSQPFR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,541
Number of Sequences: 5004
Number of extensions: 54841
Number of successful extensions: 175
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -