Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d17f
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 442 YRKQSLVLHPDKETGDEKAFMRLTKAYQALTDDEAR 549
           YR   L ++ +K T + +   R+ K+Y    D E +
Sbjct: 431 YRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETK 466


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 52  NDLILTMGGQKFEYDESGSTF 114
           +DLILT+G ++F + E  + F
Sbjct: 267 DDLILTLGKKEFSHYEHQNVF 287


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +2

Query: 365 MRCQTLIRMKFWAYLLVQLRLK*RNHIV 448
           ++C T++ + FW++++  + L   N I+
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLWFINKII 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 130  SFLALILVPATFYY 171
            +F+ L LVPAT+Y+
Sbjct: 1518 NFVVLDLVPATWYH 1531


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 164 NVAGTNINARNDKTK*KNVDPLSSYSNF*PPIVS 63
           +VAG  I   N  TK    D LS+Y+    P+++
Sbjct: 21  SVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN 54


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +1

Query: 463 LHPDKETGDEKAFMRLTKAYQALTDDEARRNWEKYGNPD 579
           L P+    D + +++L     A   D  R+ W   G P+
Sbjct: 492 LKPENLLLDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPE 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,949
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)