Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  YYL*YDRLILALAYYFSFCILLY 150
           YY  Y  +IL   YYF +  +++
Sbjct: 101 YYFYYAFIILLCVYYFYYAFIIF 123


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 397 SYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 290
           SY     PP +  +  D ++S++ P+     T +YP
Sbjct: 289 SYAPERYPPLAQGVNDDAFNSVATPTPTSVMTELYP 324


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 415 VLSGNTSYPVINCPPPSDKLVQDIWSSLSVPS 320
           V +G+TS P I     ++     IWS  S+ S
Sbjct: 195 VSTGSTSSPTIASATYTNSANSSIWSPASIDS 226


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 180 SACLSECAMSSCLDL 224
           S C   C +S C+DL
Sbjct: 193 SVCADLCLLSECVDL 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,596
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)