Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d16r
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 46 4e-06
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 31 0.23
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 27 2.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 3.8
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 27 3.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.8
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 6.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.6
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 6.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 8.7
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 46.4 bits (105), Expect = 4e-06
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = -2
Query: 658 LDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQY 479
LD P V + MGS +D + A E + +L + SAH+ T + + +
Sbjct: 377 LDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR-TPDRMVTYART 435
Query: 478 EDTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCA 305
+ G V IA AG + L +++ T PVI P L V + S + +P G+ A
Sbjct: 436 AASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVA 495
Query: 304 TVIYPDS--AALMAAQII 257
TV +S A ++A +I+
Sbjct: 496 TVAINNSQNAGILACRIL 513
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 616 FMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETL 497
F G P +E+C ++ K ++G+D L A KA E+L
Sbjct: 91 FTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAKALRESL 130
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 575 YFLTMFLVGW*THKDDNFVVDRRLQEIKLVFHPSKVAFDCV*ISCSHRCEV 727
YF +L+ W H + V RL + + HP V + C + +R +
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQVVLDNRTSI 239
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 418 PVLSGNTSYPVINCPPPSDKLVQDIWSSLSV 326
P G+ P N PPP+ + D+ SS+S+
Sbjct: 583 PPFDGDVCPPACNTPPPNYDELFDVLSSISI 613
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 412 LSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 290
LS YP++ PP K +IW P+G C ++++P
Sbjct: 59 LSFPQDYPLM---PPKMKFTTEIWHPNVHPNGEVCISILHP 96
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 406 GNTSYPV-INCPPPSDKLVQDIWSSLSVP 323
G YP ++ PPPS K QD W++ P
Sbjct: 467 GREEYPRRLSNPPPSQKTNQDAWTNRKRP 495
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 436 RSNGLGPVLSGNTSYPVINCPPP--SDKLVQDIWSSLSV 326
RS + P++ +T VI+CPP SD+ +Q W ++ +
Sbjct: 40 RSTPINPIIRSDTIQLVISCPPVTYSDE-IQVPWKAIDL 77
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 621 TTLWWIVGFKKSSWSFTQAKL 683
TT +I+ FKK+SW F + K+
Sbjct: 514 TTEEYIINFKKNSWLFFRKKI 534
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 623 NFVVDRRLQEIKLVFHPSKVAFDCV*ISC 709
N +V L + + VFH +K FDC+ SC
Sbjct: 582 NVLVHMILTQFRDVFHLTKQRFDCLKNSC 610
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -3
Query: 516 RPLKKPFALCSNMKIRMVLS--CSLL*QDDRTDSGPFFLGTLPTLSSTAHLLPINLYRTS 343
R +PFA + +IR S +L Q + P +GT T+S + H+ P L +
Sbjct: 106 RSYSRPFAPVVHSRIRFRKSPFYDILEQFNAPFVVPACVGTRNTISFSFHVTPPALSKLL 165
Query: 342 GRPSPYRL 319
P YR+
Sbjct: 166 NDPKQYRV 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,558
Number of Sequences: 5004
Number of extensions: 69023
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -