Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540...    36   0.045
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    31   0.74 
08_01_0979 + 9847008-9847093,9848148-9848682                           30   2.2  
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573...    28   9.1  
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    28   9.1  
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    28   9.1  
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   9.1  

>01_01_0699 +
           5405178-5405356,5405478-5405693,5405808-5405919,
           5406335-5406397,5406468-5406606,5406822-5406877,
           5408088-5408161,5408270-5408417,5408505-5408678,
           5408809-5408896,5408996-5409109,5409728-5409825,
           5409927-5410017,5410440-5410534,5410672-5410825,
           5410864-5410876,5411276-5411384
          Length = 640

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
 Frame = -2

Query: 628 KVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 449
           +  + MGS +D    +  A   ++  +  +L + SAH+  E   R+      T    + +
Sbjct: 458 RAAIIMGSDSDLPVMKDAAVVLKKFNIPFELTIVSAHRTPE---RMYHYALSTKERGLEV 514

Query: 448 AVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIY--PDSA 281
            +AG       +++  TS PVI  P  +  L     + S + +P G+  ATV     ++A
Sbjct: 515 IIAG-------MVASLTSVPVIGVPIMTSSLHGTDSLLSIVQMPKGIPVATVAIGNAENA 567

Query: 280 ALMAAQIIGLQD 245
            L+A +++  +D
Sbjct: 568 GLLAVRMLASRD 579


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +2

Query: 431 RSSCYSNEHESTMRI-FILLHNAKGFFSGLVG*CHAKVDIQSKFTGSFSYFLTMFLVGW* 607
           R  C+S +     ++ + L+H A+ F  GL G C A + +QS +TG   Y L  FL    
Sbjct: 408 RRPCFSKDISQFCKLEYPLVHYARMF--GLAG-CFA-ICLQSMYTGDDDYILEFFLPPNC 463

Query: 608 THKDD-NFVVDRRLQEIKLVFHPSKV 682
            ++DD N +++  L  +K      KV
Sbjct: 464 RNEDDQNALLESILARMKKCLRTLKV 489


>08_01_0979 + 9847008-9847093,9848148-9848682
          Length = 206

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 670 VKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRI 491
           V+D++D  +   H +  V MGS     + + + KAA+E+  D      S  K  +  L +
Sbjct: 136 VEDKIDLEEMLRHAEPRVLMGSARGLNNFEALQKAAKEVLYDESKSCDSEFKTLQSVLEL 195

Query: 490 MQ 485
           M+
Sbjct: 196 MR 197


>10_08_0165 +
           15356748-15356811,15357113-15357186,15357311-15357394,
           15357508-15357602,15357737-15357790,15357791-15357896,
           15358236-15358277,15358585-15358674,15358788-15358984,
           15359355-15359413,15360166-15362252
          Length = 983

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 301 VIYPDSAALMAAQIIGLQDYLVWGRLRSKQL 209
           V+ P +A L+A  ++    +LVW RLR  +L
Sbjct: 598 VVIPVAAPLLALAVVAGVSFLVWRRLRYAEL 628


>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 637 IHHKVVVFMGSPADQEHCQKIAKAARELGLDVDL 536
           +  ++VVF+GSP   E  + I K  ++  + +D+
Sbjct: 108 LSQRIVVFVGSPVKDEKLETIGKKLKKYNVSLDV 141


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 617 LYGFTSRPRTLSENS*SCP*TWTGCRPSR 531
           L G T+R R++  N+ S P  W G RP +
Sbjct: 367 LGGMTNRKRSIHSNASSPPIAWVGQRPQK 395


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 688 KRNFAWVKDQLDFLKPTIHHKVVV 617
           +R   W +DQ +  +PT+HH V V
Sbjct: 493 RRKTIWDQDQTEIEEPTLHHLVTV 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,482
Number of Sequences: 37544
Number of extensions: 481579
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)