Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)          134   5e-32
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                 40   0.003
SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28)                   29   3.0  
SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)                    29   4.0  
SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score =  134 bits (325), Expect = 5e-32
 Identities = 67/127 (52%), Positives = 84/127 (66%)
 Frame = -2

Query: 745 DKQVYRXXXXXXXXXXXXVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKA 566
           DKQVYR            VK+N+AWV  +   L       VVVFMGS +D +HC+KI  A
Sbjct: 135 DKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDHCKKIEAA 194

Query: 565 ARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSNGLGPVLSGNTSYPV 386
            +   +  DLRV+SAHK +E+TL++++ YE     +V IAVAGRSNGLGPVLSGNTS+PV
Sbjct: 195 LKSFNVPCDLRVSSAHKGSEDTLKVLRVYEGQGVPIVIIAVAGRSNGLGPVLSGNTSFPV 254

Query: 385 INCPPPS 365
           INCPP S
Sbjct: 255 INCPPVS 261


>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = -2

Query: 745 DKQVYRXXXXXXXXXXXXVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEH 587
           DKQVYR            VK+N+AWV  +   L       VVVFMGS +D +H
Sbjct: 225 DKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDH 277


>SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 368  RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRI 475
            +R+A+DDR     +  GP  V ++ Y++   S MR+
Sbjct: 1118 KRYAIDDRQKGRTKYTGPHHVLTTTYASSSSSDMRL 1153


>SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28)
          Length = 658

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRI 475
           +R+A+DDR     +  GP  V ++ Y++   S MR+
Sbjct: 582 KRYAIDDRQKGRTKYTGPHHVLTTTYASSSSSDMRL 617


>SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)
          Length = 501

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 522 PTRPLKKPFALCSNMKIRMVLSCSLL*QDDRTDSGPF 412
           P RP K P +  SN+   +   CSL  Q DR DSG F
Sbjct: 244 PPRPKKSPDSGSSNLNASLSSQCSLNDQFDR-DSGSF 279


>SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 221 SKTSPH*IVLKADYLSSH*CSTVRINYCSAS*SRRYGEGRPDVLYKFIGRRW-AVDDRVG 397
           S+ SP+ +V++A  LS    S + +   SA+ +RR  + RPD+        W AV +R G
Sbjct: 83  SQASPNDVVMEAKNLSCSGSSAIWVQSRSAAKTRRQTKRRPDIFCTPATGYWGAVYNRKG 142


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 52  YSW*KYDCFFYYL*YDRLILALAYYFSFCILL--YIKL 159
           Y + K+  F Y+  Y   +L L Y    CI+L  YIK+
Sbjct: 627 YCFPKFSKFLYFRLYQAELLLLTYIIPLCIILFTYIKI 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,488,992
Number of Sequences: 59808
Number of extensions: 563074
Number of successful extensions: 1324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)