Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   165   3e-41
AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical...    32   0.50 
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    29   4.6  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    29   4.6  
Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine n...    28   8.1  
AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho ...    28   8.1  
AF016438-13|AAK84531.2|  402|Caenorhabditis elegans Nuclear horm...    28   8.1  
AF014940-8|AAY43994.1|  356|Caenorhabditis elegans Hypothetical ...    28   8.1  
AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-...    28   8.1  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  165 bits (401), Expect = 3e-41
 Identities = 85/193 (44%), Positives = 123/193 (63%), Gaps = 1/193 (0%)
 Frame = -2

Query: 745 DKQVYRXXXXXXXXXXXXVKRNFAWVKD-QLDFLKPTIHHKVVVFMGSPADQEHCQKIAK 569
           DKQVYR            V +N+  V D    F K      V+V MGS +D    +KI+ 
Sbjct: 230 DKQVYRDMKEVTEEGLALVLKNYTKVMDITATFSKHQQKCHVLVIMGSGSDGVFARKISD 289

Query: 568 AARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSNGLGPVLSGNTSYP 389
            A++ GL+  L+V+SAHK T +TL ++  +E++    V IAVAGRSNGLGPV++GN+S P
Sbjct: 290 EAKKFGLETTLKVSSAHKTTSDTLEVIADFEESGVPTVVIAVAGRSNGLGPVIAGNSSLP 349

Query: 388 VINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLVWGRLRSKQL 209
           VINCPPPS+    DIWSSL +P+G+GC TV+ P  AAL AA+I+   +++V+G++ + QL
Sbjct: 350 VINCPPPSESTSLDIWSSLRMPNGIGCTTVLDPSEAALAAAKILASHNHIVFGKVLTAQL 409

Query: 208 DMAHSLRQADKKL 170
               ++  A++KL
Sbjct: 410 KNQINIYNANRKL 422


>AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.23 protein.
          Length = 257

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 220 SKQLDMAHSLRQADKKLRNQTA*CITKYKMKNNMQVPRLVGRTIN 86
           S+ LD  HS R  D + + +   CI  +K+KN  +V  L  + IN
Sbjct: 97  SEYLDKEHSSRIRDLETKKRN--CIANFKLKNKKEVEELFAKLIN 139


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 616 RRQLCGGSSASRNQAGLSPKQSCV*LCLDQLQSPL*GPGTPVC 744
           RRQ CG SS+S   +  S    C+ +C+ Q QS      TP+C
Sbjct: 31  RRQCCGRSSSSCCSSS-SSNSYCIPVCMAQCQSSC---TTPIC 69


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -2

Query: 673  WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 506
            W++D    +KPTI    V+ M   A  + C     ++  + R + L+V+  +       +
Sbjct: 860  WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 919

Query: 505  ETLRIMQQYEDTHGALV 455
            +  R+M+QY +    LV
Sbjct: 920  QMTRMMEQYANNLEKLV 936


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1152

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -2

Query: 673  WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 506
            W++D    +KPTI    V+ M   A  + C     ++  + R + L+V+  +       +
Sbjct: 806  WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 865

Query: 505  ETLRIMQQYEDTHGALV 455
            +  R+M+QY +    LV
Sbjct: 866  QMTRMMEQYANNLEKLV 882


>Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical
           protein C33D9.1b protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 505
           R W    R+ +V RK  P     S Y+N ++   ++F  L   K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410


>Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical
           protein C33D9.1a protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 505
           R W    R+ +V RK  P     S Y+N ++   ++F  L   K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410


>AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine
           nucleotide exchangefactor FGD-1 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 505
           R W    R+ +V RK  P     S Y+N ++   ++F  L   K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410


>AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho
           guanine nucleotideexchange factor FGD-1 protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 505
           R W    R+ +V RK  P     S Y+N ++   ++F  L   K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410


>AF016438-13|AAK84531.2|  402|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 96 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -2

Query: 631 HKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVF 452
           H +  F+G P+   HC+    +  +  +DV   V  A K  E+   I  +  + + +L  
Sbjct: 102 HSMSTFLGRPSFLLHCEPELASHSKTIIDVSYLVDVARKIFEKDATISHKSSNYYNSLEL 161

Query: 451 IAVA 440
           + +A
Sbjct: 162 LTLA 165


>AF014940-8|AAY43994.1|  356|Caenorhabditis elegans Hypothetical
           protein W02D7.2 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 82  RKNNHIFTKNNEMFYKYHECCLF 14
           RK +H  T NNE  +KY  C  F
Sbjct: 202 RKYHHFITSNNETTHKYGTCVQF 224


>AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-GTP
           exchange factor protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 505
           R W    R+ +V RK  P     S Y+N ++   ++F  L   K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,685
Number of Sequences: 27780
Number of extensions: 416491
Number of successful extensions: 998
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)