Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -1

Query: 446 CSRTIERTRARSFWEHFLPCHQLPTSF 366
           C R  E    RS  + FL C  L  +F
Sbjct: 26  CRRDAEIQELRSHLDKFLQCASLKLAF 52


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 320 RRYGEGRPDVLYKFIGRRWAVDDRVGSVPRKNGPESVRSS 439
           RR+ EG P  + K+I R  A+   + + P     E V SS
Sbjct: 444 RRFVEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGSS 483


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 320 RRYGEGRPDVLYKFIGRRWAVDDRVGSVPRKNGPESVRSS 439
           RR+ EG P  + K+I R  A+   + + P     E V SS
Sbjct: 359 RRFVEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGSS 398


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 320 RRYGEGRPDVLYKFIGRRWAVDDRVGSVPRKNGPESVRSS 439
           RR+ EG P  + K+I R  A+   + + P     E V SS
Sbjct: 678 RRFVEGYPHAVPKYIQRLKAIRATLKASPFFASHEVVGSS 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,271
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)