Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d16r
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    62   5e-10
At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylas...    59   3e-09
At5g02590.1 68418.m00194 chloroplast lumen common family protein...    29   3.3  
At3g13030.1 68416.m01623 hAT dimerisation domain-containing prot...    29   4.3  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    29   4.3  
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    28   7.6  
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    28   7.6  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    28   7.6  
At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin (...    28   7.6  
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    27   10.0 
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)...    27   10.0 
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc...    27   10.0 
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc...    27   10.0 
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    27   10.0 

>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
 Frame = -2

Query: 628 KVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 449
           +V + MGS  D    +  AK     G+  ++++ SAH+ T E +        + G  V I
Sbjct: 476 RVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVII 534

Query: 448 AVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPD--SA 281
           A AG +  L  +++  T  PVI  P  + +L  V  + S + +P G+  ATV   +  +A
Sbjct: 535 AGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNATNA 594

Query: 280 ALMAAQIIGLQDYLVWGRLRSKQLDMAHSLRQADKKLRNQ 161
           AL+A +++G+ D  +  R+R  Q DM        +KL  +
Sbjct: 595 ALLAVRMLGISDTDLVSRMRQYQEDMRDENLNKGEKLETE 634


>At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylase
           family protein / AIR carboxylase family protein similar
           to SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profile
           PF00731: AIR carboxylase
          Length = 162

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
 Frame = -2

Query: 613 MGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGR 434
           MGS  D    +  AK     G+  ++++ SAH+ T E +        + G  V IA AG 
Sbjct: 1   MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVIIAGAGG 59

Query: 433 SNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPDS--AALMAA 266
           +  L  +++  T  PVI  P  + +L  V  + S + +P G+  ATV   ++  AAL+A 
Sbjct: 60  AAHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAV 119

Query: 265 QIIGLQDYLVWGRLRSKQLDMAHSLRQADKKLRNQ 161
           +++G+ D  +  R+R  Q DM        +KL  Q
Sbjct: 120 RMLGISDNDLVSRMRQYQEDMRDENLNKGEKLETQ 154


>At5g02590.1 68418.m00194 chloroplast lumen common family protein
           various predicted proteins, Arabidopsis thaliana
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 397 SYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQI 260
           SY +++ PPPS  +    +SS   PS L    V    +AAL++A +
Sbjct: 30  SYRILHKPPPSRVIRASSFSSNPKPSFLKTTCVTLTTAAALLSASL 75


>At3g13030.1 68416.m01623 hAT dimerisation domain-containing protein
           contains Pfam profile: PF04937 domain of unknown
           function (DUF659), weak hit to PF05699 hAT family
           dimerisation domain
          Length = 544

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = -2

Query: 280 ALMAAQIIGLQDYLVWGRLRSKQLDMAHSLRQADKKLRNQTA*CITKYKMKNNMQVPRLV 101
           A  A QI G+     W    S+  +    L+    K+ +QT    +KYK+K ++    L+
Sbjct: 449 ASQADQITGISPAEWWAHKASQYPE----LQSLAIKILSQTCEGASKYKLKRSLAEKLLL 504

Query: 100 GRTINNRKNNHI 65
              ++NR+  H+
Sbjct: 505 SEGMSNRERQHL 516


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 409 SGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCAT 302
           S + S+P  + PPPS  + Q + +S+  P   GC++
Sbjct: 235 SQHNSFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSS 270


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 376 PPPSDKLVQDI-WSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLVWGRLRSKQLDMA 200
           PPP + LV     SS S+P   G +TV+      L     I L  Y    + + K  D A
Sbjct: 263 PPPRESLVSTPPISSSSLPGKSGNSTVLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTA 322

Query: 199 HSLRQAD 179
            +    D
Sbjct: 323 SASEVGD 329


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 376 PPPSDKLVQDI-WSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLVWGRLRSKQLDMA 200
           PPP + LV     SS S+P   G +TV+      L     I L  Y    + + K  D A
Sbjct: 263 PPPRESLVSTPPISSSSLPGKSGNSTVLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTA 322

Query: 199 HSLRQAD 179
            +    D
Sbjct: 323 SASEVGD 329


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 226 DVPTLNSPEGRLFEQPLVQHCQDKLL*RILIQTVRRGTTRCPVQVYRKEV 375
           DV  L   + RLF   L++H +D    R+L+Q +R  T    + + + EV
Sbjct: 60  DVSKLEDLDRRLFIDELIRHVEDDN--RVLLQKIRTRTDEVGIDLPKIEV 107


>At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin
           (AnnAt1) [Arabidopsis thaliana] GI:4959106
          Length = 317

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 604 PADQEHCQKIAKAARELGLDVDLRVTS-AHKATEETLRIMQQYEDTHG 464
           PA  +  +++  A    G + DL ++  AH++ E+   I Q Y +T+G
Sbjct: 11  PAPSDDAEQLRTAFEGWGTNEDLIISILAHRSAEQRKVIRQAYHETYG 58


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 562 RELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSNGLGPVLSGNTS 395
           REL  + +L +   HK TEE        ED  G L F+A  G    + PVL+   +
Sbjct: 584 REL-FEEELYIWLIHKVTEEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVN 638


>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
           E2; identical to gi:992706
          Length = 166

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 373 PPSDKLVQDIWSSLSVPSGLGCATVIYP 290
           PP+ +   DIW     P G  C ++++P
Sbjct: 68  PPTVRFTSDIWHPNVYPDGRVCISILHP 95


>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 292 PDSAALMAAQIIGLQDYLVWGRLRSK--QLDMAHSLRQA-DKKLRNQTA*CITKYKMK 128
           P    ++ A  IGL+   VWGRL S+   ++ A  +  A D ++R Q    + K KMK
Sbjct: 214 PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMK 271


>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 292 PDSAALMAAQIIGLQDYLVWGRLRSK--QLDMAHSLRQA-DKKLRNQTA*CITKYKMK 128
           P    ++ A  IGL+   VWGRL S+   ++ A  +  A D ++R Q    + K KMK
Sbjct: 214 PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMK 271


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 424 LGPVLSGNTSYPVINCPPPS 365
           +GP LSGN    V+  PPPS
Sbjct: 845 MGPGLSGNVGVGVVPSPPPS 864


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,632
Number of Sequences: 28952
Number of extensions: 376331
Number of successful extensions: 875
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)