Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d16f
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 46 3e-06
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 31 0.13
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 27 1.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 2.8
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 27 2.8
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 27 2.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 3.7
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 4.9
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 4.9
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 4.9
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 6.4
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 8.5
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 8.5
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 25 8.5
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 46.4 bits (105), Expect = 3e-06
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +2
Query: 182 LDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQY 361
LD P V + MGS +D + A E + +L + SAH+ T + + +
Sbjct: 377 LDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR-TPDRMVTYART 435
Query: 362 EDTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCA 535
+ G V IA AG + L +++ T PVI P L V + S + +P G+ A
Sbjct: 436 AASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVA 495
Query: 536 TVIYPDS--AALMAAQII 583
TV +S A ++A +I+
Sbjct: 496 TVAINNSQNAGILACRIL 513
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 128 TAADLDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLR 307
T+A L T R F QLD + F G P +E+C ++ K ++G+D L
Sbjct: 62 TSAALFTDGRYFNQASQQLDENWTLMKQG---FTGVPTWEEYCTQMTKCNEKVGIDSSLI 118
Query: 308 VTSAHKATEETL 343
A KA E+L
Sbjct: 119 TFPAAKALRESL 130
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 265 YFLTMFLVGW*THKDDNFVVDRRLQEIKLVFHPSKVAFDCV*ISCSHRCEV 113
YF +L+ W H + V RL + + HP V + C + +R +
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQVVLDNRTSI 239
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 422 PVLSGNTSYPVINCPPPSDKLVQDIWSSLSV 514
P G+ P N PPP+ + D+ SS+S+
Sbjct: 583 PPFDGDVCPPACNTPPPNYDELFDVLSSISI 613
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 125 VTAADLDTVKRNFAWVKDQLDFLK-PTIHHKV---VVFMGSPADQEHCQKIAKAARELGL 292
+ A LDT+ + + W K L+ ++ P HH++ +V++ + E + +A + G
Sbjct: 536 IVTAVLDTIIKKYKWGKSLLESVESPRFHHQLMPNIVYIDETVEIE----VLRALEKFGH 591
Query: 293 DVDL 304
VDL
Sbjct: 592 IVDL 595
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 428 LSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 550
LS YP++ PP K +IW P+G C ++++P
Sbjct: 59 LSFPQDYPLM---PPKMKFTTEIWHPNVHPNGEVCISILHP 96
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 434 GNTSYPV-INCPPPSDKLVQDIWSSLSVP 517
G YP ++ PPPS K QD W++ P
Sbjct: 467 GREEYPRRLSNPPPSQKTNQDAWTNRKRP 495
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 29 LADVIDSDSWRLWP 70
L ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 404 RSNGLGPVLSGNTSYPVINCPPP--SDKLVQDIWSSLSV 514
RS + P++ +T VI+CPP SD+ +Q W ++ +
Sbjct: 40 RSTPINPIIRSDTIQLVISCPPVTYSDE-IQVPWKAIDL 77
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 219 TTLWWIVGFKKSSWSFTQAKL 157
TT +I+ FKK+SW F + K+
Sbjct: 514 TTEEYIINFKKNSWLFFRKKI 534
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 217 NFVVDRRLQEIKLVFHPSKVAFDCV*ISC 131
N +V L + + VFH +K FDC+ SC
Sbjct: 582 NVLVHMILTQFRDVFHLTKQRFDCLKNSC 610
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 324 RPLKKPFALCSNMKIRMVLS--CSLL*QDDRTDSGPFFLGTLPTLSSTAHLLPINLYRTS 497
R +PFA + +IR S +L Q + P +GT T+S + H+ P L +
Sbjct: 106 RSYSRPFAPVVHSRIRFRKSPFYDILEQFNAPFVVPACVGTRNTISFSFHVTPPALSKLL 165
Query: 498 GRPSPYRL 521
P YR+
Sbjct: 166 NDPKQYRV 173
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 417 SGPFFLGTLPTLSSTAHLLPINLY 488
+G +L T+P +S +A P +LY
Sbjct: 429 NGSIYLETMPVVSQSAQYAPFDLY 452
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +1
Query: 391 CCSRTIERTRARSFW 435
CC+ T+ +TR++ FW
Sbjct: 412 CCNTTMMKTRSQPFW 426
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 388 HCCSRTIERTRARSFWEHF 444
H S+ ++RTRARSF F
Sbjct: 8 HLTSKQVQRTRARSFGASF 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,680
Number of Sequences: 5004
Number of extensions: 58126
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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