Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d16f
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 36 0.033
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 31 0.53
08_01_0979 + 9847008-9847093,9848148-9848682 30 1.6
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638... 28 5.0
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250... 28 6.5
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 6.5
08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715 27 8.7
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217 27 8.7
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 35.5 bits (78), Expect = 0.033
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Frame = +2
Query: 212 KVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 391
+ + MGS +D + A ++ + +L + SAH+ E R+ T + +
Sbjct: 458 RAAIIMGSDSDLPVMKDAAVVLKKFNIPFELTIVSAHRTPE---RMYHYALSTKERGLEV 514
Query: 392 AVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIY--PDSA 559
+AG +++ TS PVI P + L + S + +P G+ ATV ++A
Sbjct: 515 IIAG-------MVASLTSVPVIGVPIMTSSLHGTDSLLSIVQMPKGIPVATVAIGNAENA 567
Query: 560 ALMAAQIIGLQD 595
L+A +++ +D
Sbjct: 568 GLLAVRMLASRD 579
>01_01_0962 +
7570490-7570796,7571984-7572540,7572702-7572749,
7572841-7573789,7574573-7575528
Length = 938
Score = 31.5 bits (68), Expect = 0.53
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -2
Query: 409 RSSCYSNEHESTMRI-FILLHNAKGFFSGLVG*CHAKVDIQSKFTGSFSYFLTMFLVGW* 233
R C+S + ++ + L+H A+ F GL G C A + +QS +TG Y L FL
Sbjct: 408 RRPCFSKDISQFCKLEYPLVHYARMF--GLAG-CFA-ICLQSMYTGDDDYILEFFLPPNC 463
Query: 232 THKDD-NFVVDRRLQEIKLVFHPSKV 158
++DD N +++ L +K KV
Sbjct: 464 RNEDDQNALLESILARMKKCLRTLKV 489
>08_01_0979 + 9847008-9847093,9848148-9848682
Length = 206
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 170 VKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRI 349
V+D++D + H + V MGS + + + KAA+E+ D S K + L +
Sbjct: 136 VEDKIDLEEMLRHAEPRVLMGSARGLNNFEALQKAAKEVLYDESKSCDSEFKTLQSVLEL 195
Query: 350 MQ 355
M+
Sbjct: 196 MR 197
>02_04_0113 -
19861904-19862197,19862338-19862496,19862580-19863833,
19864086-19864124
Length = 581
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 143 DTVKRNFAWVKDQLDFLKPTIHHKVVV 223
+ +R W +DQ + +PT+HH V V
Sbjct: 490 EAYRRKTIWDQDQTEIEEPTLHHLVTV 516
>10_01_0240 -
2506901-2507008,2507950-2508322,2508418-2508612,
2508771-2508885,2510027-2510132,2510253-2510366,
2510521-2510538
Length = 342
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 203 IHHKVVVFMGSPADQEHCQKIAKAARELGLDVDL 304
+ ++VVF+GSP E + I K ++ + +D+
Sbjct: 108 LSQRIVVFVGSPVKDEKLETIGKKLKKYNVSLDV 141
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 223 LYGFTSRPRTLSENS*SCP*TWTGCRPSR 309
L G T+R R++ N+ S P W G RP +
Sbjct: 367 LGGMTNRKRSIHSNASSPPIAWVGQRPQK 395
>08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715
Length = 269
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 439 VPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGFFSG 326
+P K P + + S E E+ + LLH+A+ FF G
Sbjct: 188 LPHKPAPAAAADAAASEETEAVVTGAALLHHAEVFFHG 225
>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
Length = 443
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/100 (23%), Positives = 40/100 (40%)
Frame = -3
Query: 333 SVALWADVXXXXXXXXXXRAALAIF*QCSWSAGEPIKTTTLWWIVGFKKSSWSFTQAKLR 154
+V W + ALA++ + + +P K T + I + +L
Sbjct: 176 AVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNKVTFVGLIYACSHAGLVQKGRQLF 235
Query: 153 LTVSRSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMTS 34
++ +T YTC ++LLS GH L+ E MT+
Sbjct: 236 ESMKNEYGITPGLQHYTCY--LDLLSRSGHLLEAEELMTT 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,767,380
Number of Sequences: 37544
Number of extensions: 438905
Number of successful extensions: 1027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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