Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d16f
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 195 3e-50
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0) 99 1e-21
SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28) 29 2.2
SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22) 29 2.9
SB_30954| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.1
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 28 6.7
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 27 8.8
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 27 8.8
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 195 bits (475), Expect = 3e-50
Identities = 91/153 (59%), Positives = 114/153 (74%)
Frame = +2
Query: 17 GSIVLADVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFLK 196
G ++LADV+D+DSWR+WPSGDKRLM DKQVYRNL VT L+ VK+N+AWV + L
Sbjct: 109 GELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLN 168
Query: 197 PTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHG 376
VVVFMGS +D +HC+KI A + + DLRV+SAHK +E+TL++++ YE
Sbjct: 169 KHNPGHVVVFMGSASDIDHCKKIEAALKSFNVPCDLRVSSAHKGSEDTLKVLRVYEGQGV 228
Query: 377 ALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPS 475
+V IAVAGRSNGLGPVLSGNTS+PVINCPP S
Sbjct: 229 PIVIIAVAGRSNGLGPVLSGNTSFPVINCPPVS 261
>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
Length = 278
Score = 99 bits (238), Expect = 1e-21
Identities = 46/79 (58%), Positives = 57/79 (72%)
Frame = +2
Query: 17 GSIVLADVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFLK 196
G ++LADV+D+DSWR+WPSGDKRLM DKQVYRNL VT L+ VK+N+AWV + L
Sbjct: 199 GELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLN 258
Query: 197 PTIHHKVVVFMGSPADQEH 253
VVVFMGS +D +H
Sbjct: 259 KHNPGHVVVFMGSASDIDH 277
>SB_29680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 472 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRI 365
+R+A+DDR + GP V ++ Y++ S MR+
Sbjct: 1118 KRYAIDDRQKGRTKYTGPHHVLTTTYASSSSSDMRL 1153
>SB_37597| Best HMM Match : ResIII (HMM E-Value=0.28)
Length = 658
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 472 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRI 365
+R+A+DDR + GP V ++ Y++ S MR+
Sbjct: 582 KRYAIDDRQKGRTKYTGPHHVLTTTYASSSSSDMRL 617
>SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)
Length = 501
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 318 PTRPLKKPFALCSNMKIRMVLSCSLL*QDDRTDSGPF 428
P RP K P + SN+ + CSL Q DR DSG F
Sbjct: 244 PPRPKKSPDSGSSNLNASLSSQCSLNDQFDR-DSGSF 279
>SB_30954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 50 DSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFLKPTIHHKVVVFM 229
D + W G ++++ Q +++ T V D K W++ QL F K + VVVF
Sbjct: 210 DFFTFWVGGVFFIVLNSQYFKDATQVAEHKQDQDK----WLEQQLQFAKISNPQHVVVFQ 265
Query: 230 GSP 238
P
Sbjct: 266 HIP 268
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 14 EGSIVLADVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDT 148
E I L D+ D+D S +L +D V ++ VTA DLDT
Sbjct: 670 EVRIYLRDINDNDPKFSAASYHAKLSLDAPVLEHVVQVTATDLDT 714
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 102 CLSTINLLSPEGHNLQESE 46
CLS +N SP GH L+++E
Sbjct: 133 CLSLVNYYSPYGHRLRDTE 151
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 248 EHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYE 364
E + + KAAR L D+ + HKATE ++ ++Q E
Sbjct: 83 ESIKDVEKAARGLQEREDVITSEIHKATETLIKAVKQRE 121
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 248 EHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYE 364
E + + KAAR L D+ + HKATE ++ ++Q E
Sbjct: 246 ESIKDVEKAARGLQEREDVITSEIHKATETLIKAVKQRE 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,048
Number of Sequences: 59808
Number of extensions: 493213
Number of successful extensions: 1172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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