Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d16f
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas... 54 6e-08
At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylas... 51 7e-07
At5g02590.1 68418.m00194 chloroplast lumen common family protein... 29 2.4
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 29 3.1
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.5
At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin (... 28 5.5
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 27 7.2
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 27 7.2
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family... 27 7.2
At3g53950.1 68416.m05960 glyoxal oxidase-related contains simila... 27 9.6
>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
putative / AIR carboxylase, putative similar to
SP|P55195 Phosphoribosylaminoimidazole carboxylase,
chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
(AIRC) {Vigna aconitifolia}; contains Pfam profiles
PF02222: ATP-grasp domain, PF00731: AIR carboxylase
Length = 642
Score = 54.4 bits (125), Expect = 6e-08
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Frame = +2
Query: 212 KVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 391
+V + MGS D + AK G+ ++++ SAH+ T E + + G V I
Sbjct: 476 RVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVII 534
Query: 392 AVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPD--SA 559
A AG + L +++ T PVI P + +L V + S + +P G+ ATV + +A
Sbjct: 535 AGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNATNA 594
Query: 560 ALMAAQIIGLQD 595
AL+A +++G+ D
Sbjct: 595 ALLAVRMLGISD 606
>At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylase
family protein / AIR carboxylase family protein similar
to SP|P55195 Phosphoribosylaminoimidazole carboxylase,
chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
(AIRC) {Vigna aconitifolia}; contains Pfam profile
PF00731: AIR carboxylase
Length = 162
Score = 50.8 bits (116), Expect = 7e-07
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Frame = +2
Query: 227 MGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGR 406
MGS D + AK G+ ++++ SAH+ T E + + G V IA AG
Sbjct: 1 MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVIIAGAGG 59
Query: 407 SNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPD--SAALMAA 574
+ L +++ T PVI P + +L V + S + +P G+ ATV + +AAL+A
Sbjct: 60 AAHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAV 119
Query: 575 QIIGLQD 595
+++G+ D
Sbjct: 120 RMLGISD 126
>At5g02590.1 68418.m00194 chloroplast lumen common family protein
various predicted proteins, Arabidopsis thaliana
Length = 326
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 443 SYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQI 580
SY +++ PPPS + +SS PS L V +AAL++A +
Sbjct: 30 SYRILHKPPPSRVIRASSFSSNPKPSFLKTTCVTLTTAAALLSASL 75
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 431 SGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCAT 538
S + S+P + PPPS + Q + +S+ P GC++
Sbjct: 235 SQHNSFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSS 270
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 153 LTVSRSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMTSANTMLPSVS 7
LT SRS + VR RY +T L +PE L +T ++ P++S
Sbjct: 522 LTGSRSHKIMTVRSRYVDPTTQELRNPEDRALLIPTPLTVRSSSNPNIS 570
>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 756
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +2
Query: 77 DKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFLKPTIHHKVVV 223
D L+ K+VY V A L+ V R FAW++ LDF +IH + VV
Sbjct: 668 DNLLIPHKEVY-----VLAMILNVVLR-FAWMQTVLDFKFESIHTQTVV 710
>At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin
(AnnAt1) [Arabidopsis thaliana] GI:4959106
Length = 317
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 236 PADQEHCQKIAKAARELGLDVDLRVTS-AHKATEETLRIMQQYEDTHG 376
PA + +++ A G + DL ++ AH++ E+ I Q Y +T+G
Sbjct: 11 PAPSDDAEQLRTAFEGWGTNEDLIISILAHRSAEQRKVIRQAYHETYG 58
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 278 RELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSNGLGPVLSGNTS 445
REL + +L + HK TEE ED G L F+A G + PVL+ +
Sbjct: 584 REL-FEEELYIWLIHKVTEEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVN 638
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 467 PPSDKLVQDIWSSLSVPSGLGCATVIYP 550
PP+ + DIW P G C ++++P
Sbjct: 68 PPTVRFTSDIWHPNVYPDGRVCISILHP 95
>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
protein
Length = 883
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 416 LGPVLSGNTSYPVINCPPPS 475
+GP LSGN V+ PPPS
Sbjct: 845 MGPGLSGNVGVGVVPSPPPS 864
>At3g53950.1 68416.m05960 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 545
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 210 WWIVGFKKSSWSFTQAKLRLTVSRSAAVTVVRFRYTCLSTIN-LLSPEGH 64
W F S+S Q ++LTV+ S V R+R C + N +SP G+
Sbjct: 475 WGSAPFATHSFSQGQRLVKLTVAPSVPDGVGRYRIQCTAPPNGAVSPPGY 524
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,950
Number of Sequences: 28952
Number of extensions: 329092
Number of successful extensions: 860
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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