Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d15r
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-4|CAB02932.1|  234|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z81061-4|CAB02932.1|  234|Caenorhabditis elegans Hypothetical
           protein F14H8.5 protein.
          Length = 234

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 200 LLLVFYFNKE-TKXILQTFTIENQFATXYXTSEILSYYECF*S*ILK 337
           L ++ Y NKE +K +LQ+  +  +F T +   +++ +YE   S ILK
Sbjct: 149 LTIIIYLNKERSKTLLQSVMMHTEFQT-HQAEKLVEHYEATFSPILK 194


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -2

Query: 608 PCIWYYKNYIACYRINLVNCMYDEV----IDSCYTTIS*NILAXVSS 480
           P +W+  +++   + N++  MYD++    ++S Y++I  ++LA  S+
Sbjct: 145 PVVWWIDSHLVTIKPNIIRNMYDDISTNRLNSNYSSIVSSVLAFHSN 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,706
Number of Sequences: 27780
Number of extensions: 179665
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)