Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d15f
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    39   4e-05
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    39   4e-05
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    39   4e-05
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    30   0.013
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   4.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.4  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.7  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 486 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 562 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 638 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q   IFAGK + D  TL  +NI+   T+HLV++
Sbjct: 410 IQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
           +  K    P+Q  LIFAGK + D  TL  +NI+   T+HLV++
Sbjct: 2   IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 44



 Score = 27.9 bits (59), Expect = 0.067
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIK 269
           +  K    P+Q   IFAGK + D  TL  +NI+
Sbjct: 78  IQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQ 110


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIK 269
           +  K    P+Q  LIFAGK + D  TL  +NI+
Sbjct: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 141 MPISXDSSEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGL 278
           +P + D  E+L +   T+    C++  GK   + + LK+ +I D L
Sbjct: 23  VPQNIDIDEILKNDRLTKNYLDCILEKGKCTPEGEELKK-DIPDAL 67


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 418 PRPKLSRPASPPS 380
           PRP+ +RP S PS
Sbjct: 408 PRPEWARPPSTPS 420


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 156 DSSEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQH 260
           D  E++ S    +    CL+  GK   D   LK+H
Sbjct: 32  DLDEIIKSDRLLKNYVNCLLEKGKCTPDGAELKRH 66


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 535 SGSFIICCTNGLSKTXLS 482
           +GS ++C +NGL  T  S
Sbjct: 49  AGSNLLCASNGLVTTLAS 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,637
Number of Sequences: 336
Number of extensions: 2241
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)