Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d15f
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 39 5e-04
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 39 6e-04
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 39 6e-04
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 39 6e-04
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 39 6e-04
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 39 6e-04
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 31 0.12
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 1.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.5
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 26 3.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 6.2
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 25 8.2
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 8.2
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLV 293
E ++ E E+ LI+AG+++ D ++LK + I+DG ++HLV
Sbjct: 31 EAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVI 296
E + K P Q LI+AGK M D + ++++ G +HLV+
Sbjct: 28 ERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVL 71
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKD 272
E + ++ + E E+ LI++G+I+ D T+ ++NIK+
Sbjct: 29 EKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKE 64
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +3
Query: 483 LRXVLDNPLVQQMMNDPENMRSLITSNPQMQ 575
LR ++D+P + ++N+PE +++LI P+ Q
Sbjct: 1169 LRSIVDSPRKKIIVNNPEILQALIKLTPRNQ 1199
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLT 281
EVL+S+ ST+P + L++ GK + ++ L + D ++
Sbjct: 87 EVLASQLSTQPSSIRLMYKGKPLVNSRLLDDYVDADSVS 125
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 459 ELLSDPDMLRXVLDNPLVQQMMNDPENMRSL 551
+LL L+ D+ L+QQ+++DPE +++L
Sbjct: 654 DLLYSHLSLKEGQDDSLIQQIISDPETVKTL 684
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +3
Query: 156 DSSEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHL 290
D ++++++ T+P ++ L + D TL + I DG+++ +
Sbjct: 26 DFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 538 FSGSFIICCTNGLSKTXLSISGSDRSSCCILAWRS 434
F G I T ++ + SG+D S C W+S
Sbjct: 368 FEGHNAIVNTLSINSDNVMFSGADNGSMCFWDWKS 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,149
Number of Sequences: 5004
Number of extensions: 35867
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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