Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d15f
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 39 0.003
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 39 0.003
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 38 0.006
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 33 0.13
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 31 0.70
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 30 1.2
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 29 3.7
SB_24574| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_8114| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 410 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 486 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 195 PEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 4 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 38
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 168 VLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
++ +K +Q L+F G++++D DT ++ I G T+HL+++
Sbjct: 100 LIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLIVR 143
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 210 LIFAGKIMNDADTLKQHNIKDGLTVHLVI 296
LI+AGKI+ND + LK++NI + V +++
Sbjct: 112 LIYAGKILNDDNPLKEYNIDEKSFVVIMV 140
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIK 269
+ K P+Q LIFAGK + D TL +NI+
Sbjct: 108 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 140
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 452 HSSLEIHKSTLTKA-QAFKTRQPTQRV*TKWC 360
HS+ +I + ++T A + TRQPT R+ WC
Sbjct: 236 HSTTDITEISVTDALERTITRQPTSRILASWC 267
>SB_24574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 DSSEVLS-SKFSTEPEQLCLIFAGKIMNDADTLKQHNI 266
D+SE+LS +++ PE L IFAG++ ++ K ++
Sbjct: 102 DASEILSIGQYTPSPENLKAIFAGEVNTKSEIPKPKSV 139
>SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 450 MQQELLSDPDMLRXVLDNPLVQQMM 524
+ Q++ S+P ML+ ++ P +QQMM
Sbjct: 4 LMQQMSSNPQMLQQMMQAPYMQQMM 28
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 295 LKLLQDQNRRVRLVD--PQLTSVLHHLV*TRWVGWRVLKAW 411
LKL+ D N+ +R + P ++ + V + +VG VLK+W
Sbjct: 1032 LKLVVDVNKHLRPISLTPAISKLAEEFVVSSYVGPAVLKSW 1072
>SB_8114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 147 ISXDSSEVLSSKFSTEPEQLCLIFAGKIMNDAD 245
IS D+ EVL ++ Q C I GKI ND +
Sbjct: 75 ISIDTGEVLDYHVLSKQCQTCTINRGKISNDGE 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,407
Number of Sequences: 59808
Number of extensions: 290580
Number of successful extensions: 728
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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