Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d15f
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 259  CCFRVSASFMIFPAKIRHNCSGSVLNFEDNTSD 161
            C FR    F+   A I + C G  LN   +  D
Sbjct: 1615 CLFRKPEHFVASYALISNQCEGDSLNVAKSLQD 1647


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 181 FEDNTSDESXDIGI 140
           FE NT+D+S DI +
Sbjct: 563 FEQNTTDQSMDIDV 576


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 409 WALVRVLLWISRLECNRNFCPTLICS 486
           W L+ + L  + L    +FC  L CS
Sbjct: 135 WLLLMLYLLFATLPLRLSFCVVLACS 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,807
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)