Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d15f
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 56 2e-08
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 55 3e-08
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 39 0.002
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 38 0.004
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 38 0.004
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 38 0.004
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 38 0.004
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 38 0.004
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 38 0.004
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 38 0.004
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 38 0.004
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 38 0.004
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 38 0.004
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 38 0.004
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 38 0.004
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 38 0.004
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 38 0.004
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 38 0.004
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 38 0.004
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 38 0.004
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 38 0.004
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 38 0.004
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 38 0.004
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 38 0.004
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 37 0.011
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 34 0.081
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 29 3.0
At1g72450.1 68414.m08378 expressed protein 28 5.3
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 27 7.0
At3g51780.1 68416.m05678 BAG domain-containing protein low simil... 27 9.3
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 55.6 bits (128), Expect = 2e-08
Identities = 23/50 (46%), Positives = 40/50 (80%)
Frame = +3
Query: 435 DLQARMQQELLSDPDMLRXVLDNPLVQQMMNDPENMRSLITSNPQMQDLM 584
DL+ + QQ+L +P+M+R +++ P +Q +MN+PE MRS+I +NPQM++L+
Sbjct: 151 DLE-QAQQQLAQNPNMIREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELV 199
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 471 DPDMLRXVLDNPLVQQMM----NDPENMRSLITSNPQMQDLM 584
D L +L NP + QMM ++P+ M L++ NPQ++ ++
Sbjct: 364 DASQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNPQLRSML 405
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 444 ARMQQELLSDP---DMLRXVLDNP-LVQQMMNDPENMRSLITSNPQMQDLM 584
A ++L +P M++ VL NP + Q+M+ +RS++ NPQ++++M
Sbjct: 365 ASQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNPQLRSMLDMNPQLREMM 415
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLV 293
E+++ Q LI+ G+I+ D TL + ++ TVH+V
Sbjct: 45 ELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTVHMV 87
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 450 MQQELLSDPDMLRXVLDNPLVQQMMNDPENMRSLITS--NPQ-MQDLM 584
M+ ++++P M V NP + ++NDP +R + + NP+ M+++M
Sbjct: 185 MRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMM 232
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 55.2 bits (127), Expect = 3e-08
Identities = 21/44 (47%), Positives = 36/44 (81%)
Frame = +3
Query: 453 QQELLSDPDMLRXVLDNPLVQQMMNDPENMRSLITSNPQMQDLM 584
QQ+L +P+M+R +++ P +Q +MN+PE MRS+I +NPQM++L+
Sbjct: 161 QQQLAQNPNMIRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELV 204
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 444 ARMQQELLSDP---DMLRXVLDNP-LVQQMMNDPENMRSLITSNPQMQDLM 584
A +LL +P M++ V NP + Q+M+ +RS++ SNPQ++++M
Sbjct: 381 ASQLSQLLQNPAISQMMQSVFSNPQYMNQLMSLNPQLRSMLDSNPQLREMM 431
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 471 DPDMLRXVLDNPLVQQMM----NDPENMRSLITSNPQMQDLM 584
D L +L NP + QMM ++P+ M L++ NPQ++ ++
Sbjct: 380 DASQLSQLLQNPAISQMMQSVFSNPQYMNQLMSLNPQLRSML 421
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 459 ELLSDPDMLRXVLD-NPLVQQMMNDPENMRSLITSNPQMQDLM 584
+L+S LR +LD NP +++MM +P+ +R S+P+M M
Sbjct: 409 QLMSLNPQLRSMLDSNPQLREMMQNPDFLRQF--SSPEMMQQM 449
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLV 293
E+++ Q LI+ G+I+ D TL + ++ T+H+V
Sbjct: 45 ELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMV 87
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 450 MQQELLSDPDMLRXVLDNPLVQQMMNDPENMRSLITS--NPQ-MQDLM 584
M+ ++++P M V NP + ++NDP +R + + NP+ M+++M
Sbjct: 190 MRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMM 237
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK ++D TL +NI+ T+HLV++
Sbjct: 108 IQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLR 150
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 184 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 226
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDA-DTLKQHNIKDGLTVHLVIK 299
+ K +P+Q LIFAG+ + D TL +NI+ T+HLV++
Sbjct: 260 IQDKERIQPDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLVLR 303
Score = 30.3 bits (65), Expect = 1.00
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 198 EQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+Q LIF+GK+++D TL ++I+ +HL ++
Sbjct: 41 DQQRLIFSGKLLDDGRTLADYSIQKDSILHLALR 74
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVI 296
E + K P Q LI+AGK + D T K + I+ G +HLV+
Sbjct: 104 ERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVL 147
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 195 PEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 189 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 223
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLVLR 147
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 195 PEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
P+Q LIFAGK + D TL +N+++ T+HL+++
Sbjct: 38 PDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLLLR 72
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK D TL +NI+ T+HLV++
Sbjct: 182 IQDKEGISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLVLR 224
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVI 296
E + K P Q LI+AGK + D T K +NI+ G +HLV+
Sbjct: 104 ERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 147
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+ K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 195 PEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
P Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 116 PRQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 150
Score = 33.9 bits (74), Expect = 0.081
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 198 EQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 41 DQQRLIFAGKQLEDGLTLADYNIQKESTLHLVLR 74
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHL 290
+ K + P+Q L+F G + D TL +NI++ T+HL
Sbjct: 422 IQDKVGSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 210 LIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
LIFAGK + TL +NI+ G T++LV +
Sbjct: 285 LIFAGKPLEGGRTLAHYNIQKGSTLYLVTR 314
Score = 30.3 bits (65), Expect = 1.00
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
E + K +P+Q LIF G+ + D TL ++I T++LV++
Sbjct: 579 EKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLVLR 623
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 192 EPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVI 296
+P LIF GK + D TL ++I+ T+HLV+
Sbjct: 357 QPNLQRLIFLGKELKDGCTLADYSIQKESTLHLVL 391
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 210 LIFAGKIMNDADTLKQHNIKDGLTVH 287
LIF G+++ + TL +NI+ G T+H
Sbjct: 518 LIFGGRVLVGSRTLLDYNIQKGSTIH 543
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 33.9 bits (74), Expect = 0.081
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +3
Query: 165 EVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
E ++S+ Q LIF G+++ D L ++++++G T+HL+++
Sbjct: 51 EKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVR 95
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 198 EQLCLIFAGKIMNDADTLKQHNIKDGLTVHLV 293
+Q LIF GK + D TL +NI++ +HL+
Sbjct: 124 DQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
>At1g72450.1 68414.m08378 expressed protein
Length = 269
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 52 GNSRMTMYFGGKVKXF 5
GNS++T++FGGKV F
Sbjct: 103 GNSQLTIFFGGKVMVF 118
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 171 LSSKFSTEPEQLCLIFAGKIM-NDAD---TLKQHNIKD 272
++ + +PE + LIFAGKI+ +D D TL Q IK+
Sbjct: 30 VAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKE 67
>At3g51780.1 68416.m05678 BAG domain-containing protein low
similarity to SP|Q99933 BAG-family molecular chaperone
regulator-1 {Homo sapiens}; contains Pfam profile
PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain
Length = 269
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 156 DSSEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 299
D + L K E +L ++F G +DA+ L+ +KD + +V++
Sbjct: 71 DVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVE 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,283
Number of Sequences: 28952
Number of extensions: 202050
Number of successful extensions: 535
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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