Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d14r
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LIH6 Cluster: Uracil-DNA glycosylase-like protein; n=...    33   9.3  
UniRef50_A2EVC8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_Q9LIH6 Cluster: Uracil-DNA glycosylase-like protein; n=6;
           Magnoliophyta|Rep: Uracil-DNA glycosylase-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 330

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 600 YLDRHVIYNALNNGPFKDIKTIIV 529
           Y  +H+I+NALN  PF  +KT+I+
Sbjct: 147 YPPQHLIFNALNTTPFDRVKTVII 170


>UniRef50_A2EVC8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 232

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -2

Query: 534 IVINISTNIM*YLNCYFHVK*FNRISNHIS------LFVINSFNTNKINTIYYCLLDDRD 373
           +  N   NI  Y++     K F++I   ++      LF + +   N +N +YY  LD+  
Sbjct: 130 VFANSQWNIPEYIDKNHMTKSFDKIFKEVNSKYQRKLFGLRARLRNYLNVLYY--LDESV 187

Query: 372 DQKR*HWNNLLIH 334
           D+K+ HW N L H
Sbjct: 188 DEKKKHWMNSLNH 200


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,326,472
Number of Sequences: 1657284
Number of extensions: 8383607
Number of successful extensions: 15405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15394
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)