Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d14r
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18630.1 68416.m02367 uracil DNA glycosylase family protein c...    33   0.25 
At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger) fa...    27   9.4  

>At3g18630.1 68416.m02367 uracil DNA glycosylase family protein
           contains Pfam profile: PF03167 uracil DNA glycosylase
           superfamily
          Length = 330

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 600 YLDRHVIYNALNNGPFKDIKTIIV 529
           Y  +H+I+NALN  PF  +KT+I+
Sbjct: 147 YPPQHLIFNALNTTPFDRVKTVII 170


>At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 464

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 560 PLLSALYITCLSKYLLLCSAYEGFVYYIPFCTVPFIPLFRGINL 691
           P+L  L I+ L+ +  LC ++   ++ +  C VP +  F G N+
Sbjct: 336 PILHVLCISLLA-WNALCYSFPFLLFLLLCCVVPLVSSFLGYNM 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,558
Number of Sequences: 28952
Number of extensions: 171258
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)