Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13r
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0946 - 29075600-29076229                                        145   4e-35
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765...    29   5.0  
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357...    28   8.8  

>03_05_0946 - 29075600-29076229
          Length = 209

 Score =  145 bits (351), Expect = 4e-35
 Identities = 81/195 (41%), Positives = 108/195 (55%), Gaps = 18/195 (9%)
 Frame = -1

Query: 574 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKE--------- 422
           + DSL +V IS  TA L E ++W+L+YRT  Y  L+  +ER S+KL+  K          
Sbjct: 10  YGDSLSVVAISGATAVLCEAISWLLIYRTATYNSLRATIERHSRKLDAMKAGASNSSSSS 69

Query: 421 -----AHGDSLDXXXXXXXXXXXXXXXXXXRD----LSLVKMKSMFAIGFAFTALLSMFN 269
                A G S                    +D    LSL K+KS   +      +  + N
Sbjct: 70  SAGAGASGSSQPAGSSSSRAKKMDRVETSLKDAARELSLSKLKSGAVVAAVLFVVFGLLN 129

Query: 268 SIFDGRVVAKLPFYPISWIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAP 89
           S+F+GR VAKLPF P+  +Q +SHR +PG+D TDCS +FLY LC++SIR N+QKLLGFAP
Sbjct: 130 SLFEGRAVAKLPFAPVPLVQRMSHRGVPGNDPTDCSMVFLYFLCSISIRTNLQKLLGFAP 189

Query: 88  SRAASKQGGALFAAP 44
            RAA+  GG LF  P
Sbjct: 190 PRAAAAAGGGLFPMP 204


>07_01_0908 +
           7653813-7653849,7655220-7655350,7655946-7656020,
           7657007-7657111,7657648-7657911,7658474-7658614
          Length = 250

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 478 QKLKVEVERQSKKLEKRKEAHGDSLD 401
           Q++ +E ERQ++++E   E  GD++D
Sbjct: 148 QRIMMEFERQNERMEMTSEVMGDAID 173


>05_05_0381 +
           24531622-24532918,24535334-24535468,24535592-24535764,
           24536029-24536239,24536287-24536554,24536664-24536814,
           24536938-24537246
          Length = 847

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 562 LLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVER-----QSKKLEKRKEAHGDSLD 401
           ++ V +SIC   +   LT + ++RT+K +  +           S++L     +HGD LD
Sbjct: 445 IIAVVVSICALAIILALTGMYIWRTKKTKARRQGPSNWSGGLHSRELHSEGNSHGDDLD 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,902
Number of Sequences: 37544
Number of extensions: 265647
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)