Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13r
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical pr...   225   3e-59
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    30   1.5  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    28   5.9  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    28   5.9  
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical
           protein F22B5.10 protein.
          Length = 186

 Score =  225 bits (550), Expect = 3e-59
 Identities = 107/181 (59%), Positives = 138/181 (76%)
 Frame = -1

Query: 577 MWSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSLDX 398
           M  D LLI+ I+  TA  GEG+TW+LVYR++ Y++LK ++++++KKLEK+K+  GD+ D 
Sbjct: 1   MLGDCLLIIAIAFGTALAGEGITWLLVYRSDHYKRLKADMDKKTKKLEKKKQEVGDTNDK 60

Query: 397 XXXXXXXXXXXXXXXXXRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPIS 218
                            RD+S+ KMKSMFAIG AFTALLS FNSIF+GRVVAKLPFYPI 
Sbjct: 61  NIKRKLEREEERLKATNRDMSMFKMKSMFAIGLAFTALLSTFNSIFEGRVVAKLPFYPIG 120

Query: 217 WIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAPQT 38
           +IQGLSHRNL G+D TDCSFIFLYILCTM++RQN+QK+LGFAPSRA ++Q  + +A P +
Sbjct: 121 FIQGLSHRNLIGEDMTDCSFIFLYILCTMTVRQNLQKILGFAPSRAMARQQSSPWAPPNS 180

Query: 37  Q 35
           Q
Sbjct: 181 Q 181


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 93  AKPSNFCMFCLMLIVHRMYKN 155
           AK  NFC  C++LI H+ +KN
Sbjct: 196 AKIGNFCCNCVLLIFHKRFKN 216


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 120 KTYKSCLVLHLLELLQNKVVLYLLHLRHNSNEVLN*ISNF 1
           +T K  +VL ++      ++L LLH+ H + EV++ + NF
Sbjct: 216 RTLKYLIVLFVVFRFITSIILNLLHIIHVNREVVSFVENF 255


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 499 VYRTEKYQKLKVEVERQSKKLEKR-KEAH 416
           +YRTE ++K+K   ER  +  EKR KE H
Sbjct: 850 IYRTELWEKMKPVYERLKRDKEKREKEWH 878


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 499 VYRTEKYQKLKVEVERQSKKLEKR-KEAH 416
           +YRTE ++K+K   ER  +  EKR KE H
Sbjct: 850 IYRTELWEKMKPVYERLKRDKEKREKEWH 878


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -1

Query: 478 QKLKVEVERQSKKLEKRKEAHGDSLD 401
           QK+ +E E+QS+ ++ ++E  GD++D
Sbjct: 123 QKIMMEFEKQSEIMDMKEEVMGDAID 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,351
Number of Sequences: 27780
Number of extensions: 268052
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)