Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13r
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 89  FSSCFKTRWCSICCTSDTI 33
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 89  FSSCFKTRWCSICCTSDTI 33
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 89  FSSCFKTRWCSICCTSDTI 33
           F+    TRW +  C SDTI
Sbjct: 113 FNDDLSTRWIAFNCLSDTI 131


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
 Frame = +3

Query: 636 SNVLRINL---HNVDTVDKYSRIFY 701
           +++LR+++    +V+ +DKYSRI +
Sbjct: 448 ASILRVSMPKIKDVNIIDKYSRIIF 472


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 67  LVLKQLEKVQNQATFVC 117
           L+++ +E++ +QAT+ C
Sbjct: 545 LIIENVERMSDQATYTC 561


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 427 YVSLIFYSVVRLPLSVFDISP 489
           +VS   Y +++ P+S FD+ P
Sbjct: 627 HVSPTTYILLKYPISGFDLEP 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,002
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)