Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13r
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12030.1 68416.m01492 expressed protein similar to membrane p...   156   2e-38
At5g06660.1 68418.m00752 expressed protein contains PF05809: Euk...   155   3e-38
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ...    30   1.8  
At1g53200.1 68414.m06030 expressed protein                             29   2.4  
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    29   3.2  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    29   4.2  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    28   5.6  

>At3g12030.1 68416.m01492 expressed protein similar to membrane
           protein GB:BAA86974 GI:6467175 from [Homo sapiens]
          Length = 196

 Score =  156 bits (378), Expect = 2e-38
 Identities = 78/180 (43%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
 Frame = -1

Query: 574 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDS---L 404
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ +KKLE  K  +  S   +
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSI 72

Query: 403 DXXXXXXXXXXXXXXXXXXRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYP 224
                              RDLSL K KS   +      +  + NS+F+G+VVAKLPF+P
Sbjct: 73  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 223 ISWIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAP 44
           I+ ++ +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A+  GG LF  P
Sbjct: 133 ITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGG-LFPMP 191


>At5g06660.1 68418.m00752 expressed protein contains PF05809:
           Eukaryotic protein of unknown function (DUF841)
          Length = 196

 Score =  155 bits (376), Expect = 3e-38
 Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
 Frame = -1

Query: 574 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSL--- 404
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ SKKLE  K  +  S    
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSKLTN 72

Query: 403 DXXXXXXXXXXXXXXXXXXRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYP 224
                              RDLSL K KS   +      +  + NS+F+G+VVAKLPF+P
Sbjct: 73  KKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 223 ISWIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAP 44
           I+ ++ +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A+  GG LF  P
Sbjct: 133 ITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGG-LFPMP 191


>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 334

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 644 NIRNNKFKFILS-VSFIRLTILQNVERFSLNSFHLYLHCVLRRRLNMGLS 498
           +I N K++++ S + ++R     N      ++FHL LH +  RRLN+ L+
Sbjct: 285 SISNEKYEWLKSNLRYVRRHFELNDPPQRFDAFHLTLHSIWLRRLNLKLT 334


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 493 RTEKYQKLKVEVERQSKKLEKRK 425
           +T+K +K+KVE E ++ KLEK K
Sbjct: 7   KTDKLEKIKVETEEKTDKLEKIK 29


>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 478 QKLKVEVERQSKKLEKRKEAHGDSLD 401
           QK+  E ERQ++K+E   E  GD++D
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAID 149


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 493 RTEKYQKLKVEVERQSKKLEKRKEAHGDSLD 401
           + E+ ++ KVE++   +KLEKR +A     D
Sbjct: 407 KIEELERQKVEIDHSEEKLEKRNQAMNKKFD 437


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 518 RLNMGLSLQNGEISKTESGSRTTE*KIRET*GSSW 414
           R N   ++QN + S +ESG    E +  ET G SW
Sbjct: 56  RPNQDQNVQNHKQSHSESGKEVVEERPEETTGDSW 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,425
Number of Sequences: 28952
Number of extensions: 236571
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)