Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13f
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.45 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   3.2  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   3.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   5.6  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 230  VLVYRTEKYQKLKVEVERQSKKLEKRKE 313
            +L    EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +2

Query: 461 FNSIFDGRVV----AKLPFYPISWIQGLSHRNLP 550
           FN IF   +V     +LP+Y   WI    +R LP
Sbjct: 8   FNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLP 41


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 559 LHRLFFHIFVHSVYNEHQTKHTKVA 633
           LHR+ F IFVHS  N     H + A
Sbjct: 79  LHRILFPIFVHSYLNLLSQDHYEAA 103


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 53  LSTVSTLCRFILKTFEIINLNSF*V-YLSLD*RFCKMWSD 169
           +ST++ L +    + E +NL    + Y+ L  RFCK WSD
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,975
Number of Sequences: 5004
Number of extensions: 41909
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)