Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13f
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43361| Best HMM Match : DUF841 (HMM E-Value=9.7e-07)                53   2e-07
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_5584| Best HMM Match : p450 (HMM E-Value=1)                         28   7.8  

>SB_43361| Best HMM Match : DUF841 (HMM E-Value=9.7e-07)
          Length = 114

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/31 (70%), Positives = 29/31 (93%)
 Frame = +2

Query: 221 LTWVLVYRTEKYQKLKVEVERQSKKLEKRKE 313
           +T++LVYRT+KY+KLK EVE+ SKKLE+RKE
Sbjct: 2   ITYILVYRTDKYKKLKAEVEKDSKKLERRKE 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 608 IRQNIQKLLGFAPSRAA 658
           +  N+QK LGFAPSRAA
Sbjct: 84  LSMNVQKALGFAPSRAA 100


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 314 LPYVSLIFYSVVRLPLSVFDISPFCRLRPMLSLL 213
           +P++ L+FY   + P   F  +  C+L P LSL+
Sbjct: 686 MPFI-LLFYETAKYPFGFFGSTAVCKLIPTLSLM 718


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 452 LSMFNSIFDGRVVAKLPFY--PISWIQGLSHRNLPGDDYTD-CSFIF 583
           LS   S+  GR V K+     P+SW++G  + N PG ++ D  SF+F
Sbjct: 404 LSFKCSVLHGRAVNKMVTSKPPVSWVRGFHNFN-PGHEHLDQGSFVF 449


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 227 WVLVYRTEKYQKLKVEVERQSKKLEKRKE 313
           W+L Y+TE+ QK ++E E  +K+L K ++
Sbjct: 846 WLLTYKTEQEQKREME-EDHNKRLTKARD 873


>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
          Length = 286

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 200 TAFLGEGLTWVLVYRTE-KYQKLKVEVERQSKKLEKRKEAHG 322
           TAF+ +      V+R E KY + + ++E      EKRK+AHG
Sbjct: 69  TAFVADPKLVREVFRNEGKYPQREPQIELWMDYKEKRKQAHG 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,549,744
Number of Sequences: 59808
Number of extensions: 283775
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)