Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d13f
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12030.1 68416.m01492 expressed protein similar to membrane p...   150   7e-37
At5g06660.1 68418.m00752 expressed protein contains PF05809: Euk...   149   1e-36
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ...    30   1.6  
At1g53200.1 68414.m06030 expressed protein                             29   2.1  
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    29   2.8  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    29   3.6  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    28   4.8  

>At3g12030.1 68416.m01492 expressed protein similar to membrane
           protein GB:BAA86974 GI:6467175 from [Homo sapiens]
          Length = 196

 Score =  150 bits (364), Expect = 7e-37
 Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
 Frame = +2

Query: 161 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDS---L 331
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ +KKLE  K  +  S   +
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSI 72

Query: 332 DXXXXXXXXXXXXXXXXXXXDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYP 511
                               DLSL K KS   +      +  + NS+F+G+VVAKLPF+P
Sbjct: 73  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 512 ISWIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAA 658
           I+ ++ +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A
Sbjct: 133 ITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGA 181


>At5g06660.1 68418.m00752 expressed protein contains PF05809:
           Eukaryotic protein of unknown function (DUF841)
          Length = 196

 Score =  149 bits (362), Expect = 1e-36
 Identities = 73/169 (43%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
 Frame = +2

Query: 161 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSL--- 331
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ SKKLE  K  +  S    
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSKLTN 72

Query: 332 DXXXXXXXXXXXXXXXXXXXDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYP 511
                               DLSL K KS   +      +  + NS+F+G+VVAKLPF+P
Sbjct: 73  KKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 512 ISWIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAA 658
           I+ ++ +SHR L GDD TDCS  FLY+LC++SIR N+QK LGF+P R A
Sbjct: 133 ITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGA 181


>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 334

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 91  NIRNNKFKFILS-VSFIRLTILQNVERFSLNSFHLYLHCVLRRRLNMGLS 237
           +I N K++++ S + ++R     N      ++FHL LH +  RRLN+ L+
Sbjct: 285 SISNEKYEWLKSNLRYVRRHFELNDPPQRFDAFHLTLHSIWLRRLNLKLT 334


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 242 RTEKYQKLKVEVERQSKKLEKRK 310
           +T+K +K+KVE E ++ KLEK K
Sbjct: 7   KTDKLEKIKVETEEKTDKLEKIK 29


>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 257 QKLKVEVERQSKKLEKRKEAHGDSLD 334
           QK+  E ERQ++K+E   E  GD++D
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAID 149


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 242 RTEKYQKLKVEVERQSKKLEKRKEAHGDSLD 334
           + E+ ++ KVE++   +KLEKR +A     D
Sbjct: 407 KIEELERQKVEIDHSEEKLEKRNQAMNKKFD 437


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 217 RLNMGLSLQNGEISKTESGSRTTE*KIRET*GSSW 321
           R N   ++QN + S +ESG    E +  ET G SW
Sbjct: 56  RPNQDQNVQNHKQSHSESGKEVVEERPEETTGDSW 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,215
Number of Sequences: 28952
Number of extensions: 201744
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)