Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d12r
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 59 4e-09
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 59 4e-09
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 58 1e-08
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 57 2e-08
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 50 2e-06
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 47 2e-05
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 44 1e-04
05_04_0138 - 18350298-18350579,18350648-18350878,18350977-183512... 40 0.003
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 30 2.2
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
+G GTDD L+R++ TR E+D+ +K EY K + K+L I ETSG+Y+ L++L+G
Sbjct: 243 KGMGTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAI-HSETSGNYRTFLLSLVG 300
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/55 (29%), Positives = 35/55 (63%)
Frame = -3
Query: 729 GTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALI 565
GTD++ +RI R+ + +V Y ++D++L+ + + ETSG+++ AL+ ++
Sbjct: 171 GTDEKTFIRIFTERSWAHMASVASAYHHMYDRSLEK-VVKSETSGNFELALLTIL 224
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
+G GT+D L+R++ TRAEVD+ +K EY + + ++L +D ETSG+Y+ L++LIG
Sbjct: 286 KGLGTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSL-ADAVHSETSGNYRTFLLSLIG 343
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = -3
Query: 735 GAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIGP 559
G GTD+ L R + +RAEVD++ VK EY+ ++ T+ +D+ +G+TSG Y L+ L+GP
Sbjct: 310 GLGTDEEMLTRGIVSRAEVDMEKVKEEYKVRYNTTVTADV-RGDTSGYYMNTLLTLVGP 367
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALV 574
QG GTD+ AL+ IL R + + YE L+D+TL D E SGD++ AL+
Sbjct: 71 QGWGTDENALIEILGHRTAAQRAEIAVAYEGLYDETL-LDRLHSELSGDFRSALM 124
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -3
Query: 735 GAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
G GTD+ +L RI+ TRAEVDL + Y+K L+ ++ G+TSGDY+R L+AL+G
Sbjct: 258 GMGTDENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVA-GDTSGDYERMLLALLG 314
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALV 574
QG GT++ ++ ILA R ++ Y + + L I+ E SGD++RA++
Sbjct: 25 QGWGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITD-EISGDFERAVI 78
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = -3
Query: 735 GAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
G GTD+ +L RI+ TRAEVDL +K Y+K L+ +++ +T+ DY+ L+AL+G
Sbjct: 183 GMGTDENSLTRIITTRAEVDLKLIKEAYQKRNSVPLERAVAK-DTTRDYEDILLALLG 239
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/58 (37%), Positives = 38/58 (65%)
Frame = -3
Query: 735 GAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
G GT + L R++ +RAE+D+ +++ EY+ + T+ D+ G+TS YK L+AL+G
Sbjct: 245 GLGTYEDMLTRVIVSRAEIDMRHIREEYKVRYKTTVTRDV-VGDTSFGYKGFLLALVG 301
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 732 AGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALIG 562
+GT++ +L R++ AE DL +K ++K L+ I +TSGDYK L+AL+G
Sbjct: 231 SGTNEDSLTRVIVLHAEKDLKGIKDAFQKRASVALEKAIGN-DTSGDYKSFLMALLG 286
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRAL 577
QG GTD++A++ +LA R ++L YE+ +++ L + Q E SGD +RA+
Sbjct: 25 QGWGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLIQRL-QSELSGDLERAM 77
>05_04_0138 -
18350298-18350579,18350648-18350878,18350977-18351253,
18351307-18351487,18351612-18351651
Length = 336
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -3
Query: 714 ALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALVALI 565
AL R+ TRA+VD+D ++ Y + F L+ D G+ G Y+ AL++L+
Sbjct: 284 ALTRVAVTRADVDMDAIRAAYHEQFGGRLE-DAVAGKAHGYYRDALLSLV 332
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 738 QGAGTDDRALVRILATRAEVDLDNVKLEYEKLFDKTLQSDISQGETSGDYKRALV 574
Q + T+ R + R + +VD+D +K ++ + K L+ I + DY+ L+
Sbjct: 257 QCSATNKRLVTRAILGSDDVDMDKIKSVFKSSYGKDLEDFILESLPENDYRDFLL 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094,731
Number of Sequences: 37544
Number of extensions: 282807
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -